Pandoraea commovens: NTU39_09195
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Entry
NTU39_09195 CDS
T08365
Name
(GenBank) sigma-70 family RNA polymerase sigma factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
pcom
Pandoraea commovens
Pathway
pcom02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
pcom00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
NTU39_09195
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcom03021
]
NTU39_09195
Transcription machinery [BR:
pcom03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
NTU39_09195
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_r4
Sigma70_ECF
HTH_23
GerE
HTH_24
HTH_7
HTH_10
HTH_Crp_2
HTH_40
HTH_29
HTH_IclR
Motif
Other DBs
NCBI-ProteinID:
UVA81152
LinkDB
All DBs
Position
complement(1954329..1954847)
Genome browser
AA seq
172 aa
AA seq
DB search
MQTPGTLPSTVEMLYSHHHSWLKGWLHRRLGSAEQAADIAHDTFVRLLGSERVPASFDEP
RAYLTTVAQNLVSNHWRRQKLERAYLEALAQVPRDVEWSPETRAIMLETLLELDRLLDGL
PTMVRQAFLYSQLDGQTHAQIAATLGISIPTVKRYLAKALQRCYFADLSFLD
NT seq
519 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaccccgggcaccctcccctctaccgtcgagatgttgtacagccatcaccattcc
tggttgaagggctggttgcatcgacgtctgggcagtgccgaacaagcggccgacatcgcg
cacgacaccttcgtacgattgctcggcagcgagcgggtccccgcctcgttcgacgaaccc
cgcgcgtatctcacgacggttgcacagaatctcgtctcgaatcactggcgacgtcagaag
ctcgaacgcgcgtatctcgaagcgctcgcgcaagtgccgcgcgacgtcgaatggtcgccc
gaaacgcgcgccatcatgcttgagacgctgctggaactggatcgactcctggacggcctg
ccgaccatggtgcggcaggcgtttctgtattcgcagctcgacggacaaacgcacgcccag
atcgcggccacgctcggcatctcgattccgacggtcaagcgttatctcgcgaaagccttg
cagcgctgctatttcgccgacttgtcgtttctcgactga
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integrated database retrieval system
