Pandoraea commovens: NTU39_20230
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Entry
NTU39_20230 CDS
T08365
Name
(GenBank) IPT/TIG domain-containing protein
Organism
pcom
Pandoraea commovens
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TIG
Autotransporter
He_PIG
TIG_SUH
Big_9
Cadherin_5
NtrZ
Motif
Other DBs
NCBI-ProteinID:
UVA78368
LinkDB
All DBs
Position
complement(4492235..4497637)
Genome browser
AA seq
1800 aa
AA seq
DB search
MSSSIRLRRAEPGARPGLSTLWLFWLKVLLAIVASVGASSAIAAPCTFNWNAAPAGQSVY
TITTADPNLGACDPTREGLYSTAGGDTTALVAADGSTLQADLTVATADYPLIFTPSPATT
NTSWTFTMYQVTGAASPVTINITRQLGVPLPSSTSPSSGPTGGGNTVVITGTNFVQGTQV
FFDVNAATSVTVNSQTQITAVAPSHAAGPVSVGVANNGGSSAGSNLYTYVPPPAVTGVSP
TQGSTAGGTSVTITGTNLADVTSVSFGGSAGSITSKTATQIVATAPAASAGTVDITVTSP
GGTSAISGADQFTYVNVPTVSNVSPSSGPIGGGTTVAISGSNFVAGSTTVKFGATTASGV
SVSSASSLTAIAPAGAAGTVDITVTTAAGTSATAASDQYTYVAPPSLSATSPSTGPTAGG
TSVTITGTNFTSGSTVTIGGTAASSVTFNSATSLTVTTPAHAAGAADIVVTTAGGSVTQV
GGFTFISPPAVSSVSPTEGPTAGNTAVTLSGTNFTGASQVTFGGTSASFVVVNATQISAT
APPHSVGTVDIRVTTPGGTSATGPGDQYTYTAVPTVTSISPTSGSGSGGTSVTITGTGFT
PSSTVKFGTTNATNVSYNSSTTLTANAPAGTGTVDVTVSTSGGTSATSANDRFTYIAAPT
VTGLSTNIGSTAGGTSVTVTGTGFTGATAVKFGATTAGFSVSSDTSITTTSPAGSAGVVD
VTVTGPGGTSTTGAVDRFTYIAPPSAASISLSNVPFNSSAVPIPVDLSNHITSVAVSTGA
AHGTAAATGTTLTYTPTPGYSGTDTFTYTMTNVAGTSTPGTVTVTVLPSTFAYTPSAPAA
GTVGVAYSTTSLASASGGSGTYSYVVVSGALPTGLTLSSNGTLSGTPGATGTFSFSIKAT
DTVTTTNPPVTSSLLTMTIGVPTITFTPVVLADATAAVPYSQTVQATGGAMPYTYVMTGT
LPTGLSFNPTTGTISGTPTQTSAGTSVTLSATDANHFSASIGYSLRVLGPNLNITTSSLA
VGTLGVAYTQGISVSGANAGYTVTATGLPNGLQLTQSGGNYSITGTPTAAGAFSVTIRLD
DSTTGTGAPFSRTVTLPLNVNTGSMTLTPSALPTPIAGQAYTQTFTATGGVAPYRYTVTT
GALPAGLTLDPVSGVLSGTATSTGTSTFTVTVKDSSTGPGTPLSALQSYNVNITGQVASA
PAVQTQTLSSAPVSFRATANAVGGPFTRIAIATPPASGTAVVNGEDIVYTPTPSTNGDVT
FAYTLTNAIGTSAPIPVTVTVRAVPVTAGPQETSVAANGTADFDITTGATGGPFTGANVV
SISPANAGTATIVSTSAAPAAAGVARAAVATGNKYTLRFVPAAAFAGVAVITYTVSNANA
TSAPGTAKVTVAPRKDPTTDPDVTGLIGAQVEAARRFATTQIGNYNQRLEMLHGKGRAPS
SNGLNVVLPSADRGNSRDPARCQDVVGITDRDACLRGEVSPTAMNKAKSLDVRDKSDKTA
GTSGTSGIATGDGPDLPGEGENGDQRFAYWTAGTVDFGFANTAAQRSGFKFTTGGVTMGA
DYRFSDQFSLGAGVGYGHDSTDIGSSGTRSTGDSYSGALYASYRPIPVLFVDAVAGYGTL
SFDSRRWVIDANDFARGKRNGQQFFGSLSAGYEYRTDDWLFSPYGRLTASRSTLDQYSET
GAGLNALTYFKQNVNTLSGTLGVRAGFAKATRIGTFSPYIRVELQHDFNGQSLAGLAYAD
IASSGPVYFVPGSPYGSDRVQVGAGTKLRTGTLIFGLDYSVTTGMGGLQQGFRLTFTAPF
NT seq
5403 nt
NT seq
+upstream
nt +downstream
nt
atgtcttccagcattcgcttgcgccgcgctgagcccggcgctcgtcccgggttatccacg
ctttggcttttctggctgaaggttttgctggcgattgtcgcgagcgtcggggcgtcgtct
gcgattgctgcgccgtgtacgttcaactggaacgcggcaccggcgggacagtccgtctat
acgattacaacggccgaccctaatttgggcgcttgcgaccctacgcgagaaggtctttac
agcacagcgggtggtgacacgacggcactcgtggccgcagacgggtcaacccttcaggcg
gatcttactgttgcgacagcggattacccgttgatattcacgccgagcccggcgacaacg
aacacgagctggacgttcacgatgtatcaggtgaccggcgcagcgagcccggtcacgatc
aatatcacgcgtcaactcggtgtcccgctacctagcagcacctctccctccagcgggccg
acgggagggggcaatacagttgtcatcaccgggacgaactttgtccaggggactcaggtt
ttcttcgacgtcaatgcggccacgagtgtgacggtgaacagtcagactcaaatcacagcc
gtcgcaccaagtcacgccgcaggcccggtcagcgtgggggtggcaaacaatggcgggtcg
tcggcagggagcaatttgtacacgtacgtcccgccaccggcggtgacaggggtttctccg
acgcagggttcgacggccggcggcacgagcgtgacgatcaccggtacgaacctcgccgat
gtcacaagcgttagcttcggaggatcggcgggcagcatcacatcgaaaacggccacacag
atcgtcgcaacagcgcctgcggcgagtgcaggtaccgtcgatatcacggtgacctcaccg
ggcggcacgagtgcgatcagtggcgccgatcagttcacttacgtcaacgtgccgacggtg
tccaatgtctcaccgagttcggggccaataggtggcggcacgacggtagcgatttccggc
agcaactttgtcgctggaagcacaacggtgaaattcggcgcgacgacggcttcgggcgtg
agcgtctccagcgcttcgtcgctgacggccatcgcaccggccggtgctgcgggcacggtc
gacatcaccgtgacgaccgctgccgggaccagtgctacggccgcgagcgaccagtacacc
tatgtcgccccgccctcgctctcagccacttcaccttcgacaggtccaacggcagggggg
acgtccgtcaccatcacaggcaccaatttcacttcgggatcgacggtgaccatcggcggg
acagcggccagctcagttacgttcaatagcgcgacgtcactgaccgtgaccacacctgcg
cacgcggcaggcgcagcggacatcgtcgtgacaacggcgggagggtccgtgacgcaggtc
ggcgggttcacgttcatatcgcccccggcagtgtcgtccgtctcgcccacggaagggccg
accgccgggaacacggcggtgaccctctccgggacgaacttcacgggcgcgtcgcaggtg
acgttcggtgggacttcggcaagttttgtcgtcgtcaacgccacacagatcagcgcaacg
gcaccgccgcactccgtcggcaccgtcgacatccgcgtgacgacgcccggcggcacgagc
gctaccggccccggcgatcaatacacctacaccgcagtgccgacggtcacgtcgatttcg
ccgacgtcgggcagcggcagcgggggtacgagcgtgacgatcaccggtaccggtttcacc
ccgtcgtccaccgtgaagttcggcacgaccaatgccacgaacgtctcttacaacagcagc
acgacgctgaccgccaatgcacctgcgggtaccggcacggtcgacgtgaccgtctcgacg
tcggggggcacgagcgcgaccagcgccaatgacaggttcacgtatattgctgcgccgacg
gtcacaggtctgtcgacgaacatcgggtcgactgcgggcggcacgtccgtgacggtgacg
ggcaccgggttcaccggggcgacggccgtgaagttcggcgcaacgacggcgggattctcc
gtgagcagcgacacgtcgatcacgaccacgtcacccgccggatcggccggggtggtggac
gtcaccgtcaccggtcccggggggacgagcaccacaggggcggtcgaccgcttcacgtac
attgcgccgccgagcgctgcgtcgatatcgcttagcaacgtgccgttcaacagttcagcc
gtgcccattccggtcgatctctcgaatcacatcacgtcggtggctgttagcacaggggcc
gcccacggcacggccgcggcgacgggtacgacgctgacttacacaccgacgcccggttac
tccggaacggatacgttcacctacaccatgacgaacgtggccgggacatcgacccccggg
accgtcacagtcacggtgctgccgtcgacatttgcgtacacgccatcggcacctgctgcc
ggtacggtcggcgtggcttacagcaccacgtcgctggcgtcggcatcggggggatcgggg
acgtatagctatgtcgtggtttcaggcgctttgccgaccggtctgacgctgagttccaac
ggtacgctttccggtacacccggcgcgacaggcacctttagcttctcgatcaaggcgacc
gacaccgtcacgacgaccaacccgccggtcaccagcagcttgctgaccatgacgatcggc
gtaccgacgatcacgttcacgccggtggtcctggcggatgcgaccgccgccgtcccttac
tcgcagacggttcaggcaactggcggcgcgatgccttatacgtatgtgatgaccgggaca
ttgcctacgggcctgagttttaacccgaccacgggcacgatcagcggaacaccgacgcag
acatcggccggcacttccgtgacgctctcggcaacggacgccaaccatttctcggcttcg
atcggatacagcttgcgcgtgctggggccgaatctgaacatcacaaccagttcgctggcc
gtcgggacgctgggcgtggcttatacccaaggcatctccgtttcgggcgcgaacgcgggc
tacacggtgacggcgaccgggctgccgaacggcttgcagctcacgcaatccggcggcaat
tactccatcacggggacgccaaccgcagcgggggcattctccgtcacgatccggctcgat
gactcgaccacaggcaccggcgcaccgttctccagaactgtcacgctgcccctgaacgtc
aacacgggatcgatgacgctgacgccgagcgcgctacccacgcccatcgccggtcaggcg
tacacccagacgttcacggcgacgggcggtgttgcaccttatcgctacacggtcaccacc
ggtgcgttgcccgcagggctcacgctcgacccggtcagtggcgtgttgtccggcacggcg
acgtcgaccggcaccagcacgttcaccgtcacggtgaaggattcgagtaccgggccgggc
acgccgttaagcgcgctgcaaagctacaacgtcaacatcacgggccaggtcgcatcggcc
ccggccgtgcagacgcagacgctctccagcgcacctgtttcgttccgcgcgacggccaat
gccgtgggtgggccgttcacgcgcattgcgattgcgacgccgcctgccagcggcacggct
gtggtcaacggtgaggacatcgtctatacgccgacgccgagcaccaacggcgacgtgacg
tttgcctacacgctgaccaacgcgatcggtacgtccgccccgattccggtgacggtgacc
gtgcgtgccgtaccggtgacggccggaccgcaagagacgtccgtcgccgctaacggcacg
gcggacttcgatatcaccacgggtgccacaggcggaccgttcactggcgcgaatgttgtg
tcgatctcgcctgcgaatgccgggacggcaacgatcgtcagcacatcggcagcacccgcc
gcagcgggtgtcgcgcgtgccgccgtcgccacgggtaataagtacacgctgcgcttcgta
ccggcggcggcgttcgcgggtgtcgccgtgatcacgtacacggtgtcgaacgccaacgcg
acgtcggccccgggcacggcgaaggtgacggtcgcgccgcgtaaagacccgacgaccgac
cccgatgtgaccggcctcatcggcgcacaggtcgaggccgctcgtcgtttcgccacgacg
cagatcggcaactacaaccagcgtcttgaaatgctgcacggtaagggacgtgcgccgtcg
agcaatgggttgaacgtggtattaccgtcggcggatcggggtaacagtcgtgacccggcg
cgctgccaggacgtcgtcggcattacggatcgcgacgcctgcctgcgtggagaagtgagc
ccgacggcgatgaacaaggcgaagagcctcgacgtgcgcgacaagtcggacaagactgcg
ggcacgagcggcacgagcggcattgccacgggcgacggtcccgacctgcccggcgaaggc
gagaatggcgaccaacgcttcgcctactggacggccggtacggtggacttcggtttcgcc
aataccgccgcccagcgctctggcttcaagttcacgaccggtggtgtgacgatgggcgcg
gactatcgcttctccgaccagttctcgctgggggcaggcgtcggttacggacacgactcg
accgacatcggcagttccggcacgcgcagtacgggcgacagctacagcggtgcgttgtac
gcgagctatcgtccgattccggtgctcttcgtcgatgccgtcgcaggttacggcacgctg
agcttcgattcgcgccgctgggtcatcgacgcgaacgacttcgcgcgcggcaagcgcaac
gggcaacagttcttcggctctttgtcggcgggttacgagtaccggaccgacgactggctg
ttctcgccgtacggacgtctgacggcatcgcgctccacgctcgatcagtacagcgaaacc
ggtgcggggctgaacgcgctcacgtacttcaagcagaacgtgaacacgctctccggcaca
ctgggcgtgcgcgcaggtttcgcgaaagcgacacgcatcgggacgttctcgccctacatt
cgcgtggagttgcagcacgacttcaacggtcagagtctggcggggctggcgtatgcggat
atcgcgtcgagcgggccggtgtacttcgtgccgggcagtccgtacggcagcgaccgtgtg
caagtcggcgcgggaacgaaactgcgcaccggtacgctcatcttcgggctggattacagc
gtaacgacggggatgggcggcttgcagcaaggtttccggttgacgttcacggcaccgttc
tga
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