Pandoraea commovens: NTU39_20600
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Entry
NTU39_20600 CDS
T08365
Symbol
rfbB
Name
(GenBank) dTDP-glucose 4,6-dehydratase
KO
K01710
dTDP-glucose 4,6-dehydratase [EC:
4.2.1.46
]
Organism
pcom
Pandoraea commovens
Pathway
pcom00521
Streptomycin biosynthesis
pcom00523
Polyketide sugar unit biosynthesis
pcom00525
Acarbose and validamycin biosynthesis
pcom00541
O-Antigen nucleotide sugar biosynthesis
pcom01100
Metabolic pathways
pcom01110
Biosynthesis of secondary metabolites
pcom01250
Biosynthesis of nucleotide sugars
Module
pcom_M00793
dTDP-L-rhamnose biosynthesis
Brite
KEGG Orthology (KO) [BR:
pcom00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00541 O-Antigen nucleotide sugar biosynthesis
NTU39_20600 (rfbB)
09109 Metabolism of terpenoids and polyketides
00523 Polyketide sugar unit biosynthesis
NTU39_20600 (rfbB)
01055 Biosynthesis of vancomycin group antibiotics
NTU39_20600 (rfbB)
09110 Biosynthesis of other secondary metabolites
00521 Streptomycin biosynthesis
NTU39_20600 (rfbB)
00525 Acarbose and validamycin biosynthesis
NTU39_20600 (rfbB)
Enzymes [BR:
pcom01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.46 dTDP-glucose 4,6-dehydratase
NTU39_20600 (rfbB)
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GFIT
Motif
Pfam:
GDP_Man_Dehyd
Epimerase
3Beta_HSD
RmlD_sub_bind
Polysacc_synt_2
NAD_binding_4
adh_short
Motif
Other DBs
NCBI-ProteinID:
UVA78435
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All DBs
Position
complement(4576005..4577069)
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AA seq
354 aa
AA seq
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MIFVTGGAGFIGANFVLDWLAQHDEPVVTIDKLTYAGNLANLASLERDPRHHFAQVDICD
RAALDKLYAEHRPRAVLHFAAESHVDRSIHGPGEFVQTNIVGTFTMLEAARAYWGSLEGE
ARDNFRFVHVSTDEVYGSLSPTDPAFTETTPYAPNSPYSASKAGSDHLVRAYHHTYGLPV
LTTNCSNNYGPYQFPEKLIPLVIANALAGKPLPIYGDGSNVRDWLYVGDHCSAIREVLAK
GVLGEVYNVGGWNEQNNLSVVKHLCTLLDELSPRADGKSYLDQITFVTDRPGHDRRYAID
ARKLERELGWRPAETFETGMRKTVQWYLANGEWVRQVQSGEYQRWIETHYQKND
NT seq
1065 nt
NT seq
+upstream
nt +downstream
nt
atgatcttcgtgactggcggcgccggattcatcggcgcaaacttcgttctcgactggctc
gcgcaacacgatgaaccggtcgtgacgatcgacaagctcacctacgcaggcaatctggcg
aatctggcaagtcttgagcgcgacccccgtcaccatttcgcgcaagtcgacatctgcgat
cgcgcagcgctcgacaagctgtacgccgaacaccgtccgcgtgccgtgctgcatttcgcg
gcggaaagccacgtcgaccgttccattcatggtccgggcgagttcgtgcagacgaacatc
gtcggcaccttcacgatgctcgaagccgctcgcgcctattggggttcgctcgaaggcgaa
gcgcgcgataacttccgattcgtgcatgtatcgacggatgaggtctacggttcgctgagc
ccgacggatccggccttcaccgagaccacgccctacgccccgaacagcccgtattcggcc
tcgaaggcaggctccgaccatctggtgcgcgcttatcaccacacgtacggtctgccggtc
ctcacgaccaactgctcgaacaactacggtccctaccagttccccgagaagctgattccg
ctggtgatcgccaatgcgctcgccggcaaaccgttgccgatctatggcgacggcagcaac
gtgcgcgactggctgtacgttggcgaccattgctcggccattcgcgaagtgcttgccaag
ggtgtgctgggcgaggtctacaacgtgggcggctggaacgagcagaacaacctgtcggtc
gtgaagcatctgtgcacattgctcgacgagttgtcgccgcgcgccgacggtaagtcgtac
ctcgatcagatcacgttcgtgacggatcgcccgggacatgatcgtcgttacgctatcgat
gcccgcaagcttgagcgcgaactgggctggcgtccggcggaaacgttcgagaccggcatg
cgcaagacggtgcagtggtatctggccaacggcgagtgggtgcgtcaggtgcagtcaggc
gagtaccagcgctggatcgaaacgcattatcagaagaacgactga
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