Pandoraea commovens: NTU39_23475
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Entry
NTU39_23475 CDS
T08365
Name
(GenBank) IS3 family transposase
Organism
pcom
Pandoraea commovens
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
rve
HTH_21
HTH_28
rve_2
rve_3
HTH_Tnp_1
HTH_32
HTH_29
HTH_23
DDE_Tnp_IS240
HTH_Tnp_Tc3_2
Motif
Other DBs
NCBI-ProteinID:
UVA78951
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Position
join(5213088..5213550,5213550..5214466)
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AA seq
459 aa
AA seq
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MTKYDEAFKLRVVRQYLRGDAGLKAVAKRHGIDHGLVSRWAAAYDKHGVAGIRKKHSVYS
AEFKLSVLKCMCSERLSIKQTCARFDLREATSVSRWQRQYHEGGIHALEPRPKGRRPSVM
PPISPSAPPRKENDTRTREELLEELEYLRAENAYPKKARCPAQAKGAGPASDGAKEKAQI
VRELRSQYSLALLLRAAQLARATFYYQCKVLDAGDRFAELKAKISAIYTHHKGRYGYRRI
TAELQSSGQHVNHKTVQRLMQLLGLKSLVRPKRYRSFRGEVGRIAPNLLARDFSAEHPNQ
KWVTDVTEFNVKGKKLYLSPVMDLYNGEIIAWQTDERPHYGFVGKMLEQAMRRLTGQQRP
VLHSDQGWQYQMGDWQRKLAQNGVEQSMSRRGNCLDNAAMESFFATLKSEFFYLNQFESI
EQLREGLRRYIRYYNHERISLKRNGLSPVQYRTQPVDVR
NT seq
1380 nt
NT seq
+upstream
nt +downstream
nt
atgacgaagtacgacgaggcattcaagctgcgggtggttcggcagtatctgcggggcgat
gcgggactcaaggctgtggcaaagcggcatggcattgaccacgggctggtgagtcggtgg
gctgccgcttacgataagcatggggtcgcggggattcgcaagaaacacagcgtctatagt
gctgagttcaagctttcggtgttgaagtgcatgtgtagcgagcgattgtcgatcaagcag
acgtgcgcgcgcttcgatctgcgagaggccaccagtgtttctcgctggcaacgccagtat
catgagggcggaatccacgctctggagccgcgccccaaaggccgacggccatctgttatg
cccccgatcagtccctcagcacctccgcgcaaagagaacgacactcgcacccgcgaggaa
ttgctcgaagaactcgaatatttgcgtgcggagaacgcgtatcctaaaaaagctcgatgc
cctgctcaagcaaaaggagcagggccagcatcagacggggcaaaagaaaaagcgcaaata
gtgcgcgagttacgctcgcaatactcgttggcgcttttgctcagggctgcccaattggct
cgggcaacgttctactatcaatgcaaggtgcttgatgccggtgaccgatttgctgagctc
aaggcgaagatttcagcgatctatacgcatcataaaggacgttacggctacaggcgcatc
acggccgagcttcaatcaagtgggcaacatgtcaatcacaaaacggtccagcgactgatg
caattgctcgggttgaagtcgctcgtgcggcctaagcgctatcgctcatttcgaggggaa
gtcggccggattgcgccgaacttgcttgcgcgcgactttagcgctgagcacccgaaccag
aagtgggtcaccgatgtgacggaattcaacgtcaagggaaaaaagctgtatttgtcgcca
gtgatggacttatataacggcgagatcatcgcttggcagaccgatgagcggccccattac
ggcttcgtaggcaagatgttggagcaagctatgcggcgcctgactggccagcaacgcccc
gtcttgcactccgatcaaggctggcagtaccagatgggcgactggcagcgaaaactcgca
caaaatggcgtcgagcaaagcatgtcgagacgaggtaattgcctggataacgctgctatg
gaaagctttttcgctacgctcaagtcagagttcttctacctgaaccagttcgagagcatc
gagcaattacgcgagggcttgcgccgatacattcgctactacaatcacgaacgcatcagc
ctcaaacgaaacgggctgagtcctgtgcaatacagaacccagcccgtggacgtccgctga
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