Paracoccus contaminans: B0A89_10545
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Entry
B0A89_10545 CDS
T04876
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pcon
Paracoccus contaminans
Pathway
pcon03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pcon00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
B0A89_10545
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pcon03400
]
B0A89_10545
Enzymes [BR:
pcon01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
B0A89_10545
DNA repair and recombination proteins [BR:
pcon03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
B0A89_10545
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID:
ARJ70001
UniProt:
A0A1W6CYQ8
LinkDB
All DBs
Position
2223013..2225487
Genome browser
AA seq
824 aa
AA seq
DB search
MSPLKSRAPGGPPARRADLSRLAAYRARRDPGATPEPFDAGAPSAGALRYSMQNHDATRL
HWDLRLERDGVLLSWAVTRGPSLDPAEKRLAVRTEDHPIPYLTFEGVIPRGQYGAGTVML
WDLGHWRPLDDAGRGLAKGHLRFQLYGRRLTGLWDLVRIRGRPSEKRENWLLVKAEDDAA
RRPDPVARHRVSVSTGRSLDQIAAGDGPVPSGPASPLKLPDPVEPMLASLVDSPPEGEGW
LHEVKIDGYRGMVHLGKGGPVIRTRNGLDWTARFAALVPALAELPARSALIDGEIVAGAG
AQGFSALQQAITDGGPFGYIAFDLLDLDGRSLRNRPLTERRAALERLLADAPPLGLVQLS
VALPGKGADAMAAVCAAGGEGIVSKRADAVYRSGRADSWRKAKCERRTAFAVIGWTRSDS
PGRPFGALLLASAEGQGWRYRGRVGTGFSAQAQAELAARMAPLTRGTAPAQVPRAQSRGV
TWIEPALMAEIRYAEPTADGILRHASFQGLREDKMPPLPPSSPAPVIRIAPGGQGGRVIE
GIAVTSPDRVIFPGCGVTKGDLAAYYAAAAPLMLAHCADRPLALLRLPEGLAGERFFQKH
AGRGFPAQMRTTPIPGEDEPAIYVNTAAGLVAGAQMGVVEYHIRGIRRDRADRPDRLVFD
LDPDEGLDFSQVRAAAIDLRDRLADLGLPTWPMLTGGKGIHVVADLRRTVGWDTVKLFAR
AFAHLLAAEQPGRYVAVMSKARREGRIFIDWLRNDAQATAVSAFSCRAREGATVAMPLSW
DALDRTDGANAYDIRTALQAAPGIAPDRRRPVSLEPAARALAGG
NT seq
2475 nt
NT seq
+upstream
nt +downstream
nt
atgagcccgctgaaaagccgcgcaccaggcgggccacccgcaaggcgggctgacttgtcg
cgccttgccgcctatcgcgcccgccgcgatccgggggcgacacccgagccgttcgatgcg
ggcgcgccttcggcgggggcgctgcgctattcgatgcagaaccatgacgcgacgcggctg
cactgggatctgcgccttgaacgggatggcgtgctgctgagctgggcggtcacgcgcggc
ccctcgctcgacccggcagaaaagcggctggcggtgcgcaccgaggaccatccgatcccc
tacctgaccttcgagggcgtgatcccccggggccaatacggcgcgggcaccgtgatgctg
tgggatctgggccattggcggccgcttgatgatgcgggccggggccttgccaaggggcat
ctgcgctttcagctttacggccggcggctgaccggcctgtgggatctggtgcggatcagg
ggcaggccgtccgaaaagcgcgagaactggctgctggtcaaggccgaggatgacgccgcc
cgccgccccgatccggtggcccgtcatcgcgtcagcgtttcgaccggccgcagccttgac
cagatcgcggcgggcgatgggccggtgccgtccggccccgccagcccgctgaagctgcca
gatccggtcgagccgatgctggccagtctggtcgacagcccgcccgagggcgagggctgg
ctgcacgaagtcaagatcgacggctatcgcggcatggtccatctgggcaagggcgggccg
gtgatccgcacccgcaacgggctggactggacggcccgcttcgcggcgctggtgccggcg
ctggccgaactgcccgcgcgctcggccctgatcgacggggaaatcgtcgcgggcgcgggc
gcgcagggattttccgcattgcagcaggcgatcaccgatggcggccccttcggctatatc
gcgttcgacctgctggatctggatgggcgcagcctgcgcaatcgcccgctgacagaacgg
cgcgccgcgctggaacggcttctggccgatgccccgccgctggggctggtgcagctttcc
gtggcgctgcccggcaagggcgcggatgcgatggcggcggtctgcgccgcagggggcgag
gggattgtgtccaaacgtgccgatgcggtctatcgcagcggcagggccgacagttggcgc
aaggccaaatgcgagcgtcggaccgcctttgccgtgatcggatggacgaggtcggacagc
cccggccggcccttcggtgcgctgctgctggccagcgccgaggggcagggctggcgctat
cgcggccgggtgggcaccggcttttcggcgcaagcgcaggcagagctggccgcccgcatg
gcgccgctgacgcgcgggacggcgcccgcgcaggtgccgcgcgcgcagtcgcggggcgtg
acatggatcgagccggcgctgatggccgagatccgctatgccgagccaaccgccgatggc
atcctgcgccatgccagctttcagggcctgcgcgaggacaagatgccccccctgccgccg
tcctctccagcccccgtcatccgcattgcgcccggcggccagggcgggcgggtgatcgaa
gggatcgccgtcaccagccccgaccgggtgatctttcccggctgcggcgtgaccaagggc
gatctggccgcctattacgccgctgcggcgcccctgatgctggcccattgcgccgatcgc
ccgctggcgctgctgcgcctgcccgaggggctggcgggcgagcggttctttcagaaacat
gccggacgcggctttcccgcgcagatgaggaccacccccattccgggcgaggatgaacct
gccatctatgtcaacaccgctgccgggctggttgcgggggcgcagatgggcgtcgtggaa
tatcatatccgcggcatccggcgtgaccgggcggaccgccccgaccggctggtgttcgac
ctggaccctgacgaggggctggatttttcccaagttcgcgccgcggcgatcgacctgcgc
gaccggcttgccgatctgggcctgccgacctggccgatgctgaccggcggcaagggcatc
catgtcgtcgccgatctgcggcgcaccgttggctgggacacggtcaagctgttcgcccgc
gcctttgcccatctgctggcggccgagcagccgggccgctatgtcgcggtcatgtccaag
gcccggcgcgaaggcaggatcttcatcgactggctgaggaatgatgcgcaggccactgca
gtttcggccttttcctgccgggcgcgcgaaggggcgacggtggcgatgccgctgtcctgg
gatgcgctggatcgcaccgatggggcgaatgcctatgatatccgaaccgccctgcaggct
gcgccagggatcgcgcctgatcgcaggcggcccgtatcgctcgagcctgcggcccgcgcc
cttgcggggggctga
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