KEGG   Propithecus coquereli (Coquerel's sifaka): 105817691
Entry
105817691         CDS       T08746                                 
Symbol
LIG1
Name
(RefSeq) DNA ligase 1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
pcoq  Propithecus coquereli (Coquerel's sifaka)
Pathway
pcoq03030  DNA replication
pcoq03410  Base excision repair
pcoq03420  Nucleotide excision repair
pcoq03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:pcoq00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    105817691 (LIG1)
   03410 Base excision repair
    105817691 (LIG1)
   03420 Nucleotide excision repair
    105817691 (LIG1)
   03430 Mismatch repair
    105817691 (LIG1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pcoq03032]
    105817691 (LIG1)
   03400 DNA repair and recombination proteins [BR:pcoq03400]
    105817691 (LIG1)
Enzymes [BR:pcoq01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     105817691 (LIG1)
    6.5.1.6  DNA ligase (ATP or NAD+)
     105817691 (LIG1)
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     105817691 (LIG1)
DNA replication proteins [BR:pcoq03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    105817691 (LIG1)
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     105817691 (LIG1)
DNA repair and recombination proteins [BR:pcoq03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     105817691 (LIG1)
   NER (nucleotide excision repair)
    Other NER factors
     105817691 (LIG1)
   MMR (mismatch excision repair)
    Other MMR factors
     105817691 (LIG1)
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C DDR PucR
Other DBs
NCBI-GeneID: 105817691
NCBI-ProteinID: XP_012508914
Ensembl: ENSPCOG00000027835
LinkDB
Position
Unknown
AA seq 921 aa
MQRSIMSFFHPKKEGKAKKPEKEASNSSRETEPPPKAALKEWNGVVPDNDSPVKRPGRKT
TQVLGSEGEEDDEALTPPKGKKPAPDCLKVSPPGPATSPENSTSLSDSSPMGISPLGILK
RRTARKQLPKRTIQDVLEEQSEDKDREAKRRKEEEGEAPAEAETPKESLTKAEVATKKEA
EEGDQPTTPPNSVETSKAEKPKESGSEPEVPVKQEAPEDETKPTPRAPRTLSSFFTPRKP
AVKKEVKEEGPDTPGKENSKGPLDPTSYNPAKNNYHPVEDACWKPGQKVPYLAVARTFEK
IEEVSARLRMVETLSNLLRSVVALSPPDLLPVLYLSLNSLGPPQQGLELGVGDGVLLKAV
AQATGRQLESVRAEAAEKGDVGLVAENSRSTQRLMLPPPPLTASGVFTKFLDIARLTGSA
STAKKMDIIKGLFVACRHSEARFIARSLSGRLRLGLAEQSVLAALAQAVSLTPPGQGFPP
AVVDAGKGKTAEARKTWLEEQGMTLKQTFCEVPDLDQIVPVLLEHGLERLPEHCRLSPGI
PLKPMLAHPTRGVSEVLKRFEEAAFTCEYKYDGQRAQIHVLEGGEVKIFSRNQEDNTGKY
PDIISRIPKIKLPSVTSFILDTEAVAWDREKKQIQPFQVLTTRKRKEVDASEIQVQVCLY
AFDLIYLNGESLVREPLSRRRQLLRENFVETEGEFVFATSLDTKDIDQIAEFLEQSVKDS
CEGLMVKTLDVDATYEIAKRSHNWLKLKKDYLDGVGDTLDLVVIGAYLGRGKRAGRYGGF
LLASYDKDSEELQAICKLGTGFSDEELEEHHQQLQALVLPAPRSYVRIDGAVAPDHWLDP
STVWEVKCADLSLSPIYPAARGLVDSEKGISLRFPRFIRVREDKQPEEATSSAQVAYLYR
KQSQIQNQQGEDSDSNLEDMY
NT seq 2766 nt   +upstreamnt  +downstreamnt
atgcagcgaagtatcatgtcatttttccaccccaagaaagagggtaaagcgaagaagcct
gagaaggaggcatccaacagcagcagagagacggagccccctccaaaagcagcgctgaag
gagtggaatggagtggtccccgataacgactctccagtgaagaggccggggaggaagacg
acccaggtcttgggcagcgaaggggaggaggacgacgaagccctgactccccccaaagga
aagaaacctgccccagactgcctgaaagtctcccctcctggtcctgccacatctcctgag
aacagcacttccctctctgactcctctcccatgggcatctccccactggggatcctgaag
cgccgcacagctcggaagcaactcccaaaacgtacaattcaggacgtcctggaagagcag
agtgaggacaaggaccgagaagccaagaggaggaaggaggaggaaggtgaggcaccagca
gaagcagagaccccaaaagaaagcctaacaaaggctgaagtggcaacaaagaaagaagca
gaagagggggaccagcccacgacacctcccaattccgtagagacctccaaagcagagaag
ccgaaggaaagcggttcagaacccgaggtgcccgtgaagcaggaagcaccggaggacgag
actaagcctacccccagagcccccaggacactcagcagcttcttcacaccccggaagcca
gcagtcaaaaaagaagtgaaagaagaggggccggacactccagggaaggagaacagcaag
ggacccctggacccaaccagctacaatcctgccaagaacaactaccatcccgtcgaagat
gcctgctggaaaccaggccagaaggtcccttatctggccgtggcccgaacatttgagaag
atcgaggaggtttctgctcggctccggatggtggagacactgagcaacttgctgcgctcc
gtggtggccctgtcacccccagacctcctccctgtcctctacctcagcctcaacagcctt
gggccaccccagcagggcctggagcttggcgttggtgacggcgtccttctcaaggcagtg
gcccaggccacaggtcggcagctggagtcggtccgggctgaggcggccgagaagggcgac
gtggggctggtggccgagaacagtcgcagcacccagaggctcatgttgccgccaccccca
ctcactgcctcgggggtcttcaccaagttcctcgacatcgccaggctcacgggcagtgct
tccacagccaagaagatggacatcatcaaaggcctcttcgttgcctgccgccactcggaa
gcccgattcatcgccaggtccctgagtggacggctgcgcctggggctggcagagcagtca
gtgctggccgccctcgcccaggctgtgagcctcacaccccccggccaaggtttcccccca
gccgtggtggatgcaggaaagggcaagacagcagaggccaggaagacgtggctggaggag
cagggcatgaccctgaagcagacattctgtgaggtgcctgacctggaccaaattgtcccc
gtgctgctggagcatggcctggaacgtctcccggagcactgcaggctgagcccaggcatc
ccgctgaaaccaatgttggcccatcccactcgcggtgtcagcgaggtcctgaaacgcttc
gaggaggcagctttcacctgcgagtacaaatacgatgggcagagggcacagatccatgtt
ctagaaggcggggaggtgaagattttcagcaggaatcaggaagataacaccgggaagtac
ccggacatcatcagccgcatccccaagattaaactcccgtctgtcacatccttcatcctg
gacactgaagccgtggcttgggaccgggaaaagaagcagattcagccattccaagttctc
accactcgcaaacgcaaggaggtggacgcgtctgagatccaggtgcaagtgtgtttgtac
gcctttgacctcatctacctcaacggagagtccctggtacgtgagcccctttcccgacgc
cggcagctgctccgggagaacttcgtggagactgagggtgagtttgtcttcgctacctcc
ctggacaccaaggacattgaccagatcgccgagtttctggagcagtccgtgaaagactcc
tgcgaggggctgatggtgaagaccctggatgtcgatgccacctatgagatcgccaagaga
tcgcacaactggctcaagctaaagaaggactacctcgacggcgtgggtgacaccctggac
cttgtggtgatcggcgcctacctgggccggggaaagcgggccggccgatacgggggcttc
ctgctggcctcctacgacaaggacagtgaggagctgcaggcgatatgcaagctcggaact
ggcttcagcgacgaggagctggaggagcatcaccagcagctccaggccctggtgctgccc
gcgccccgctcctacgtgcgcatagatggcgccgtggctcccgaccactggctggacccc
agcaccgtgtgggaggtgaagtgcgcagatctctccctctcccccatctaccctgctgcc
cggggcctggtggacagtgagaaagggatctcccttcgcttccctcggtttattcgagtc
cgggaagacaagcagcccgaggaggccaccagcagtgcccaggtggcctatctgtaccgg
aagcagagtcagattcagaaccagcagggcgaggactcagactctaaccttgaagatatg
tactaa

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