Propithecus coquereli (Coquerel's sifaka): 105817691
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Entry
105817691 CDS
T08746
Symbol
LIG1
Name
(RefSeq) DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
pcoq
Propithecus coquereli (Coquerel's sifaka)
Pathway
pcoq03030
DNA replication
pcoq03410
Base excision repair
pcoq03420
Nucleotide excision repair
pcoq03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pcoq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
105817691 (LIG1)
03410 Base excision repair
105817691 (LIG1)
03420 Nucleotide excision repair
105817691 (LIG1)
03430 Mismatch repair
105817691 (LIG1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pcoq03032
]
105817691 (LIG1)
03400 DNA repair and recombination proteins [BR:
pcoq03400
]
105817691 (LIG1)
Enzymes [BR:
pcoq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
105817691 (LIG1)
6.5.1.6 DNA ligase (ATP or NAD+)
105817691 (LIG1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
105817691 (LIG1)
DNA replication proteins [BR:
pcoq03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
105817691 (LIG1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
105817691 (LIG1)
DNA repair and recombination proteins [BR:
pcoq03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
105817691 (LIG1)
NER (nucleotide excision repair)
Other NER factors
105817691 (LIG1)
MMR (mismatch excision repair)
Other MMR factors
105817691 (LIG1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
DDR
PucR
Motif
Other DBs
NCBI-GeneID:
105817691
NCBI-ProteinID:
XP_012508914
Ensembl:
ENSPCOG00000027835
LinkDB
All DBs
Position
Unknown
AA seq
921 aa
AA seq
DB search
MQRSIMSFFHPKKEGKAKKPEKEASNSSRETEPPPKAALKEWNGVVPDNDSPVKRPGRKT
TQVLGSEGEEDDEALTPPKGKKPAPDCLKVSPPGPATSPENSTSLSDSSPMGISPLGILK
RRTARKQLPKRTIQDVLEEQSEDKDREAKRRKEEEGEAPAEAETPKESLTKAEVATKKEA
EEGDQPTTPPNSVETSKAEKPKESGSEPEVPVKQEAPEDETKPTPRAPRTLSSFFTPRKP
AVKKEVKEEGPDTPGKENSKGPLDPTSYNPAKNNYHPVEDACWKPGQKVPYLAVARTFEK
IEEVSARLRMVETLSNLLRSVVALSPPDLLPVLYLSLNSLGPPQQGLELGVGDGVLLKAV
AQATGRQLESVRAEAAEKGDVGLVAENSRSTQRLMLPPPPLTASGVFTKFLDIARLTGSA
STAKKMDIIKGLFVACRHSEARFIARSLSGRLRLGLAEQSVLAALAQAVSLTPPGQGFPP
AVVDAGKGKTAEARKTWLEEQGMTLKQTFCEVPDLDQIVPVLLEHGLERLPEHCRLSPGI
PLKPMLAHPTRGVSEVLKRFEEAAFTCEYKYDGQRAQIHVLEGGEVKIFSRNQEDNTGKY
PDIISRIPKIKLPSVTSFILDTEAVAWDREKKQIQPFQVLTTRKRKEVDASEIQVQVCLY
AFDLIYLNGESLVREPLSRRRQLLRENFVETEGEFVFATSLDTKDIDQIAEFLEQSVKDS
CEGLMVKTLDVDATYEIAKRSHNWLKLKKDYLDGVGDTLDLVVIGAYLGRGKRAGRYGGF
LLASYDKDSEELQAICKLGTGFSDEELEEHHQQLQALVLPAPRSYVRIDGAVAPDHWLDP
STVWEVKCADLSLSPIYPAARGLVDSEKGISLRFPRFIRVREDKQPEEATSSAQVAYLYR
KQSQIQNQQGEDSDSNLEDMY
NT seq
2766 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgaagtatcatgtcatttttccaccccaagaaagagggtaaagcgaagaagcct
gagaaggaggcatccaacagcagcagagagacggagccccctccaaaagcagcgctgaag
gagtggaatggagtggtccccgataacgactctccagtgaagaggccggggaggaagacg
acccaggtcttgggcagcgaaggggaggaggacgacgaagccctgactccccccaaagga
aagaaacctgccccagactgcctgaaagtctcccctcctggtcctgccacatctcctgag
aacagcacttccctctctgactcctctcccatgggcatctccccactggggatcctgaag
cgccgcacagctcggaagcaactcccaaaacgtacaattcaggacgtcctggaagagcag
agtgaggacaaggaccgagaagccaagaggaggaaggaggaggaaggtgaggcaccagca
gaagcagagaccccaaaagaaagcctaacaaaggctgaagtggcaacaaagaaagaagca
gaagagggggaccagcccacgacacctcccaattccgtagagacctccaaagcagagaag
ccgaaggaaagcggttcagaacccgaggtgcccgtgaagcaggaagcaccggaggacgag
actaagcctacccccagagcccccaggacactcagcagcttcttcacaccccggaagcca
gcagtcaaaaaagaagtgaaagaagaggggccggacactccagggaaggagaacagcaag
ggacccctggacccaaccagctacaatcctgccaagaacaactaccatcccgtcgaagat
gcctgctggaaaccaggccagaaggtcccttatctggccgtggcccgaacatttgagaag
atcgaggaggtttctgctcggctccggatggtggagacactgagcaacttgctgcgctcc
gtggtggccctgtcacccccagacctcctccctgtcctctacctcagcctcaacagcctt
gggccaccccagcagggcctggagcttggcgttggtgacggcgtccttctcaaggcagtg
gcccaggccacaggtcggcagctggagtcggtccgggctgaggcggccgagaagggcgac
gtggggctggtggccgagaacagtcgcagcacccagaggctcatgttgccgccaccccca
ctcactgcctcgggggtcttcaccaagttcctcgacatcgccaggctcacgggcagtgct
tccacagccaagaagatggacatcatcaaaggcctcttcgttgcctgccgccactcggaa
gcccgattcatcgccaggtccctgagtggacggctgcgcctggggctggcagagcagtca
gtgctggccgccctcgcccaggctgtgagcctcacaccccccggccaaggtttcccccca
gccgtggtggatgcaggaaagggcaagacagcagaggccaggaagacgtggctggaggag
cagggcatgaccctgaagcagacattctgtgaggtgcctgacctggaccaaattgtcccc
gtgctgctggagcatggcctggaacgtctcccggagcactgcaggctgagcccaggcatc
ccgctgaaaccaatgttggcccatcccactcgcggtgtcagcgaggtcctgaaacgcttc
gaggaggcagctttcacctgcgagtacaaatacgatgggcagagggcacagatccatgtt
ctagaaggcggggaggtgaagattttcagcaggaatcaggaagataacaccgggaagtac
ccggacatcatcagccgcatccccaagattaaactcccgtctgtcacatccttcatcctg
gacactgaagccgtggcttgggaccgggaaaagaagcagattcagccattccaagttctc
accactcgcaaacgcaaggaggtggacgcgtctgagatccaggtgcaagtgtgtttgtac
gcctttgacctcatctacctcaacggagagtccctggtacgtgagcccctttcccgacgc
cggcagctgctccgggagaacttcgtggagactgagggtgagtttgtcttcgctacctcc
ctggacaccaaggacattgaccagatcgccgagtttctggagcagtccgtgaaagactcc
tgcgaggggctgatggtgaagaccctggatgtcgatgccacctatgagatcgccaagaga
tcgcacaactggctcaagctaaagaaggactacctcgacggcgtgggtgacaccctggac
cttgtggtgatcggcgcctacctgggccggggaaagcgggccggccgatacgggggcttc
ctgctggcctcctacgacaaggacagtgaggagctgcaggcgatatgcaagctcggaact
ggcttcagcgacgaggagctggaggagcatcaccagcagctccaggccctggtgctgccc
gcgccccgctcctacgtgcgcatagatggcgccgtggctcccgaccactggctggacccc
agcaccgtgtgggaggtgaagtgcgcagatctctccctctcccccatctaccctgctgcc
cggggcctggtggacagtgagaaagggatctcccttcgcttccctcggtttattcgagtc
cgggaagacaagcagcccgaggaggccaccagcagtgcccaggtggcctatctgtaccgg
aagcagagtcagattcagaaccagcagggcgaggactcagactctaaccttgaagatatg
tactaa
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integrated database retrieval system