Propithecus coquereli (Coquerel's sifaka): 105818136
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Entry
105818136 CDS
T08746
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
pcoq
Propithecus coquereli (Coquerel's sifaka)
Pathway
pcoq03013
Nucleocytoplasmic transport
pcoq03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pcoq00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
105818136 (UPF1)
03015 mRNA surveillance pathway
105818136 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcoq03019
]
105818136 (UPF1)
Enzymes [BR:
pcoq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
105818136 (UPF1)
5.6.2.5 RNA 5'-3' helicase
105818136 (UPF1)
Messenger RNA biogenesis [BR:
pcoq03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
105818136 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
105818136 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
105818136
NCBI-ProteinID:
XP_012509478
Ensembl:
ENSPCOG00000023813
UniProt:
A0A2K6GAT9
LinkDB
All DBs
Position
Unknown
AA seq
1129 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGCPGGPGGGGAG
GPSGTGAGAAAGQLDAQVGPEGILQNGAVDDSVAKTSQLLAELNFEEDEEDTYYTKDLPV
HACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETV
LECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLS
WLVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAY
QYQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGNEDLVII
WLRDMRLMQGDEICLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNF
QVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLP
DLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQ
LTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSS
ADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVP
VVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALS
AFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTE
AANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAF
QGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLL
NYYKEQKVLVEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDR
SSQGRPSNMYFQTHDQIGMISAGPSHVAAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRG
TPKGKTGRGGRQKNRFGLPGPSQTTLPNSQASQDVASQPFSQGALTQGYISMSQPSQMSQ
PGLSQPELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3390 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggaggcgtacgggcccagctcgcagacgctcacttttctggacaccgaggag
gccgagctgcttggcgccgatactcagggctccgagttcgagttcaccgactttaccctc
cccagccagacgcagactccccccggctgccccggcggccccggaggtggcggcgcggga
ggcccgagcggcacgggcgcgggcgctgcggcgggacagctcgacgctcaggtcggaccc
gagggcatcctgcagaatggggccgtggacgacagtgtggccaagaccagccagttgttg
gccgagttgaactttgaagaggatgaggaagacacctattacacgaaggacctccccgta
cacgcctgcagttactgtggaatacacgatcctgcctgcgtggtttactgcaacaccagc
aagaagtggttctgcaacggacggggaaatacttctggcagccacattgtaaatcacctc
gtgagggcgaaatgcaaagaggtgaccctgcacaaggacgggcccctgggcgagacggtg
ctggagtgctacaactgcggctgccgcaacgtcttcctcctcggcttcatccctgccaag
gccgactcggtggtggtgctgctgtgcaggcagccctgcgccagccagagcagcctcaag
gacatcaactgggacagctcacagtggcagccgctgatccaggaccgctgcttcctgtcc
tggctggtcaagatcccctctgagcaggagcagctgcgggcacgccagatcacggcccag
cagatcaacaagctggaagagctctggaaggaaaacccttctgccacgttggaggatctg
gagaagcccggggtggatgaggagccgcagcacgtgctcctgcggtacgaggacgcctac
cagtaccagaacatcttcgggcccctggtcaagctggaggctgactacgacaagaagctg
aaggagtcgcagactcaagataacatcacggtcaggtgggacctgggccttaacaagaag
agaatcgcctacttcactttgcccaagactgactctggtaatgaggatttagtcataatt
tggttaagagacatgcggctcatgcagggggacgagatatgcctgcggtacaaaggggac
cttgcacccctgtggaaagggatcggccatgtcatcaaagtccctgataattatggtgat
gagatcgccattgagctgcggagcagtgtgggtgcacccgtggaggtgactcacaacttc
caggtggattttgtgtggaagtccacctcgttcgacaggatgcagagtgcgttgaaaacg
ttcgctgtggacgagacctctgtgtctggctacatctaccacaaattgctgggccacgag
gtggaggacgtgatcatcaagtgccagctgccgaagcgcttcacagcgcaagggctcccc
gacctcaaccactctcaggtttacgcggtgaagactgtgctgcagaggccactaagcctg
atccagggcccgccgggcacaggaaagacggtgacctcggccaccatcgtctaccacttg
gctcgacaaggcaatgggcctgtgcttgtctgtgctccgagcaacatcgctgtggatcag
ctgaccgagaagatccaccagacgggactgaaggtcgtgcgcctctgtgccaagagccgc
gaggccatcgactccccggtgtcgttcctggccctgcacaaccagatcaggaacatggac
agcatgccggagctgcagaagctgcagcagctgaaggacgagaccggggagctgtcgtct
gccgacgagaagcggtaccgggccctgaagcgcaccgccgagagggagctgctcatgaac
gcggatgtcatctgctgcacgtgtgtgggcgctggtgacccgaggctcgccaagatgcag
ttccggtccattttaatcgacgaaagcacccaggccaccgagccggagtgcatggttcct
gtggtccttggtgccaagcagctgatcctcgtgggtgaccactgccagctgggcccggtg
gtgatgtgcaagaaggcagccaaggccggactgtcgcagtcgctctttgagcgcctggtg
gtgctgggcatccggcccatccgcctgcaggtccagtaccggatgcacccggcgctcagc
gccttcccatccaacatcttctacgagggctcgctccagaatggcgtcactgcagcggat
cgcgtgaagaaggggtttgacttccagtggccgcagcctgataagccgatgttcttctac
gtgacccagggccaagaagagatcgccagctcgggcacctcctacctgaacaggacggaa
gcggcaaacgtggagaagatcaccacaaagctgctgaaggcgggcgccaagccggaccag
atcggcatcatcacgccctacgagggccagcgctcctacctggtgcagtacatgcagttc
agcggctccctgcacaccaagctctaccaggaggtggagatcgccagtgtggacgccttc
cagggccgcgagaaggacttcattatcctctcctgcgtgcgggccaacgagcaccagggc
atcgggtttctaaatgaccccaggcgtctcaacgtggccctgacccgagcaaggtacggt
gtcatcatcgtgggcaaccccaaggcgctgtccaagcagccactgtggaaccacctgttg
aactactacaaggagcagaaggtgctggtggaggggcccctgaacaacctgcgcgagagc
ctcatgcagttcagcaagccccggaagctggtcaacaccatcaacccgggggcccgcttc
atgacgacagccatgtacgacgcgcgggaggccatcatcccaggctcagtctacgatcgc
agcagccagggccggccctcgaacatgtacttccagacccacgaccagatcggcatgatc
agcgccggccccagccacgtggccgccatgaacatccccatccctttcaacctggtcatg
ccgcccatgccgccgcccggctacttcggacaagccaacgggccggctgcaggccggggc
actccgaaaggcaagactgggcgtggggggcgccagaagaaccgcttcgggcttcctggg
cccagccagacaaccctccccaacagccaggccagccaggacgtggcgtcccagcccttc
tcccagggtgccctgacgcagggctatatctccatgagccagccctcccagatgagccag
cccggcctctcccagccggagctgtcccaggacagctacctcggcgatgagtttaagtca
cagatcgacgtggcgctctcccaagactccacgtaccagggagagcgggcgtaccagcat
ggcggggtgacggggctgtcccagtactag
DBGET
integrated database retrieval system
