Pseudomonas chlororaphis subsp. aurantiaca: JM49_14605
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Entry
JM49_14605 CDS
T03338
Name
(GenBank) ATP-dependent DNA helicase
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
pcp
Pseudomonas chlororaphis subsp. aurantiaca
Pathway
pcp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pcp00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
JM49_14605
09124 Replication and repair
03420 Nucleotide excision repair
JM49_14605
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcp03021
]
JM49_14605
03400 DNA repair and recombination proteins [BR:
pcp03400
]
JM49_14605
Enzymes [BR:
pcp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
JM49_14605
Transcription machinery [BR:
pcp03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
JM49_14605
DNA repair and recombination proteins [BR:
pcp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
JM49_14605
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-ProteinID:
AIS12851
LinkDB
All DBs
Position
3181516..3183804
Genome browser
AA seq
762 aa
AA seq
DB search
MNYRIAVRALCEFTAKVGDLDLRFTPSPTALEGIQGHRTVAARRNANYRSEVSLEGSFGA
LTVKGRADGYDPDANLLEEIKTYRGDLERMPANHRQLHWAQAKIYGWLLCQQLQLSSIRL
ALVYFDILSERETSLVEEHGAEALEQFFNQQCSLFLQWAEQELAHRHARDQAMAALSFPH
PDFRPGQRSLAESVYKAVSTGRCLMAQAPTGIGKTLGTVFPMLKAMPGQQLDKLFFLTAK
TPGRKLALGAAEVLFERRPGLPLRVLELVARDKACEHPELACHGESCPLAKGFYDRLPAA
RQAASQVSLLDQQAVREIALEHGLCPYYLSQEMARWSDLLVADYNYYFDFSALLFGLAQA
NQWKVAALVDEAHNLVERGRSMYSASLDQYQLNTVRQVAPEPLKKPLQRLNREWNALHKE
QSRPYQAYDQAPAPLLKALSLCISAIGDYLNDHPQGLDSRLQGFYFDALQFTRVAELFDE
QFLFDISKRELNARRSLSELCLRNVVPAGFLAPRLSAARSTVLFSATLNPWHYYRDLLGL
PETTVWVDVESPFSAAQLDVHIVSRISTRFAHRQASLAPIVELIASQFRRRPGNYLAFFS
SFDYLQQVASLLAEQHPDIPLWQQSRGMDEGQRQAFLERFDADGQGVGFAVLGGAFGEGI
DLPGSRLIGAFIATLGLAQLNPVNEQLKQRMAAIFGAGYDYTYLYPGLQKVVQAAGRVIR
SQQDRGVVMLIDDRFAEPRVRQLLPGWWSLDAAGGEALQGAG
NT seq
2289 nt
NT seq
+upstream
nt +downstream
nt
gtgaactaccgcatcgcggtacgggcgctgtgcgaattcactgccaaggtcggcgacctc
gacctgcgcttcacgccgtcgcccaccgcgctggaaggcatccagggccaccgcacggtg
gcggcgcggcgcaacgcgaactaccggagcgaagtgtccctcgaaggcagcttcggcgcg
ttgaccgtcaagggcagggcggacggctacgacccggacgccaacctgctggaagagatc
aagacctaccgtggcgacctggagcgcatgccggccaaccatcgccagctgcattgggcc
caggcgaaaatctatggctggctgctgtgccagcagttgcaactgagcagcatccgtctg
gccttggtgtacttcgacatcctcagcgagcgcgagacgtcgctggtggaagagcacggg
gccgaggccctggagcagttcttcaaccagcaatgcagcctgttcctgcaatgggccgaa
caggaactggcccaccggcacgcccgcgaccaggccatggcggcgttgagtttcccccat
cccgacttccgtccggggcagcgcagcctggccgagtcggtgtacaaggcggtgagcacc
gggcgctgcctgatggcccaggcgccgaccgggatcggcaagaccttgggcacggtgttt
cccatgctcaaggcgatgccggggcagcaactggacaagctgttcttcctcaccgccaag
accccgggacgcaaactggcgctgggtgccgccgaggtgctgttcgagcgccgccccggg
ctgccgttgcgggtgctggagctggtggcccgggacaaggcctgcgagcacccggaactg
gcctgtcatggcgagtcctgcccgttggccaagggtttctacgaccgtctgccggcggcg
cggcaggcggcgagccaggtgtcgctgctggaccagcaggcggtgcgcgagatcgccctg
gagcacgggctgtgcccgtattacctgagccaggaaatggcccgctggagcgatctgctg
gtggcggactacaactactacttcgatttcagcgccttgttgttcggcctggcgcaggcc
aaccaatggaaggtcgccgcgctggtggacgaggcacataacctggtggagcgtgggcgc
tcgatgtacagcgccagcctcgaccagtaccagttgaacaccgtgcgccaggtcgccccg
gagccgctgaagaagccgctgcaacggctcaaccgcgaatggaatgccctgcacaaggag
cagtcgcggccgtaccaggcctatgaccaggcgccggccccgttgctcaaggcgctgtcg
ctgtgtatctcggcgatcggcgattacctcaacgaccacccgcaagggctcgacagtcgg
ttgcagggcttctatttcgatgccctgcagttcacccgggtggccgaactgttcgacgag
cagttcctgttcgatatcagcaaacgcgagctcaatgcccgccgcagcctgtccgagttg
tgcctgcgcaacgtggtgccggcgggcttcctggcgccgcgactgagcgcggcgcgcagt
acggtgctgttctcggcgacgctcaacccctggcattactaccgcgacctgctggggctg
ccggaaaccacggtgtgggtggatgtcgagtcgccgttcagtgccgcgcagctggacgtg
cacatcgtcagccggatctccacccgttttgcccatcgccaggcgtccctggcgcccatc
gtcgagctgatcgccagccagttccgccggcgccccggcaattacctggcgttcttcagc
agcttcgattacttgcaacaggtggccagcctgctggccgaacagcacccggatattcct
ctgtggcagcagtcccgcgggatggatgaagggcaacgccaggcgtttctcgagcgcttc
gacgccgatggccagggagtgggtttcgccgtgctgggcggggcgttcggcgagggcatc
gacctgccgggttcgcgcttgatcggcgcctttatcgccaccctcggcctggcccagttg
aacccggtgaacgagcagttgaaacagcgtatggcggcgatttttggcgccggttacgac
tacacctacctgtaccccggcctgcagaaggtggtgcaggccgcgggccgggtgattcgc
agccagcaggaccgtggcgtggtgatgctgatcgacgaccgcttcgccgagcccagggtc
cggcaattgctgccgggctggtggtcgctcgacgccgcgggcggcgaggcgcttcagggc
gccgggtag
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