Pseudomonas citronellolis: PcP3B5_27230
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Entry
PcP3B5_27230 CDS
T04637
Name
(GenBank) Putative DNA ligase-like protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pcq
Pseudomonas citronellolis
Pathway
pcq03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pcq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
PcP3B5_27230
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pcq03400
]
PcP3B5_27230
Enzymes [BR:
pcq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
PcP3B5_27230
DNA repair and recombination proteins [BR:
pcq03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
PcP3B5_27230
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AMO76157
LinkDB
All DBs
Position
2999095..3001647
Genome browser
AA seq
850 aa
AA seq
DB search
MASDTPSLEEYARRRDFSGTPEPRGEAPGHQAGELEFVVQKHDASHLHYDFRLELDGVLK
SWAVPKGPCLDPSVKRLAIEVEDHPLEYAGFEGHIPEGHYGAGDVIVWDRGRWQPLGDPR
QGLENGHLKFRLEGSKLHGSWNLIRTRMAGRKPQWFLVKGRDDEARDFPRHDILAEAPQS
VLSGRTLPGEAAPAQKPADPPRRAAAAKAPRRKAAKAGAMPERISPELATLLDAPPEGDW
RYELKLDGYRILARVEKGEVRLQTRNGHDWAERLPDICAALRALPLESAWLDGEILVVDE
EGRPDFQRLQNAFDVGASDEVRYTLFDLLWLDGEDLRRQPVEQRRAMLAGLLKHNASDRL
RYSEDFTDDPRSILDSACRLGLEGLIGKRAGSVYVERRSTDWIKLKCKRRQEFVILGLTP
PKGSRRHFGALLLGLHDDQGELRYAGKVGTGFDAATLKRVHDSLRPLASKTCPLASPPRG
QAFQGVTWLRPERLCEVAFAEMTREGLVRHAVFHGLRNDKPAKAIVEERAKPAAGEGAQP
TAKRPRKAAKDDAKVAGVAITHPERVIDAASGLRKLDLARYYERAAEHILPWLGDRPVSL
LRAPDGVGGEVFFQRHASRNAMPGVEQLDPRLDPGHAPLLRIATAKALAGAAQMGVVELH
TWNARVDDLEHPDRFVLDLDPDPSLPWARMIEATRLTLAVLDELGLACFLKTSGGKGMHI
LVPLERRHGWDEVKDFAHAITRHLARQMPDRFSAVSGPKNRVGRIFVDYLRNSRGASTVC
AWSVRAREGLPVSVPVAEGELDALRGANAWNLGSIDERLALKGEDDPWTSWGETRQRLTR
RMWQQLGEER
NT seq
2553 nt
NT seq
+upstream
nt +downstream
nt
atggccagtgatacgccgagcctggaggagtacgcccgccgccgtgacttcagtggcacg
ccggagccgcgcggcgaggcccccggacaccaggccggggaactggagttcgtcgtccag
aagcatgacgccagccacctgcactacgacttccgcctggaactcgatggcgtgctcaag
agctgggcggtgcccaaggggccctgcctggacccttcggtgaagcgcctggccatcgag
gtggaggaccacccgctggaatacgccggcttcgagggccacatccccgagggccattac
ggcgccggcgacgtcatcgtctgggaccgcggccgctggcagcccctgggcgacccgcgg
cagggcctggagaacggccacctgaagttccgcctggaaggcagcaagttgcacggcagc
tggaacctcatccgcacgcgcatggccgggcgcaagccgcagtggttcctggtcaagggg
cgcgacgatgaggcccgcgacttcccccgccacgacatcctcgccgaggcgccgcagagc
gtgctcagcgggcggacgctgcccggcgaggcggcaccggcgcaaaagccggccgacccg
cccaggcgcgccgccgcggccaaggcgccgcgccgcaaggccgccaaggccggcgccatg
cccgagcgtatctccccggaactggccacgttgctggatgcgcccccggagggcgactgg
cgctacgagctgaagctcgacggctaccgcatcctggcacgggtggaaaagggcgaggtg
cgcctgcagacgcgcaacggccacgactgggcggagcgcctgccggacatctgcgccgcg
ctgcgcgccctgccgctggagtcggcctggctcgacggcgaaatcctggtggtggacgag
gagggccgcccggacttccagcgcctgcagaacgccttcgacgtcggcgccagcgacgag
gtgcgctacaccctgttcgacctgctctggctggacggcgaggacctgcgccggcagccc
gtggagcagcgccgcgccatgctggccgggttgctgaagcacaatgccagcgaccgcctg
cgctactcggaggatttcaccgacgacccgcgcagcatcctcgacagcgcctgccgtctg
ggcctggaagggctgatcggcaagcgcgccggtagcgtctatgtcgagcgccgctccacc
gactggatcaagctcaagtgcaagcgccgccaggaattcgtcatcctcggcctgaccccg
cccaagggcagccgccggcatttcggcgcgctgctgctgggcctgcacgacgaccagggc
gaactgcgctacgccggcaaggtgggcaccggcttcgacgccgccaccctcaagcgggtg
cacgacagcctgcgcccgctggccagcaagacctgcccgctggcctcgccgccgcgcggc
caggccttccagggcgtgacctggctgcgccccgagcggctctgcgaagtggcctttgcc
gaaatgacccgcgagggcctggtgcgccacgcggtgttccacggcctgcgcaacgacaag
cccgccaaggcgatagtcgaggaacgcgcgaagccggcggccggggagggcgcgcagccc
acggcgaaacgcccgcgcaaggcggcgaaggacgacgcgaaggtggccggcgtggccatc
acccaccccgagcgggtgatcgacgccgccagcggcctgcgcaagctggacctggcgcgc
tactacgagagggccgccgagcacatcctgccctggctcggcgaccgtccggtatcgctg
ctgcgcgccccggacggcgtcggcggcgaggtgttcttccagcgccacgcctcgcgcaac
gccatgcccggagtggaacagctggacccgcgcctggacccgggccacgcgccgctgctg
cgcatcgccaccgccaaggccctggccggcgccgcacagatgggcgtggtcgagctgcac
acctggaacgcccgggtggacgacctggagcaccccgaccgcttcgtcctcgacctggac
cccgaccccagcctgccctgggcgcggatgatcgaggcgacccggctgaccctcgcagtg
ctcgacgaactgggcctggcctgcttcctcaagaccagcggcggcaagggcatgcacatc
ctggtgccgctggagcgccgccacggctgggacgaggtcaaggacttcgcccacgccatc
acccgccacctggccaggcagatgccggaccgcttcagcgccgtatccgggccgaagaac
cgcgtcgggcggatcttcgtcgactacctgcgcaacagccgcggcgccagcaccgtgtgc
gcctggtcggttcgcgcccgcgaaggcctgccggtgtcggtgccggtggccgagggcgag
ctggatgcgttgcgcggcgccaatgcctggaacctgggcagcatcgacgagcgcctggcg
ctgaagggcgaggatgacccctggacgagctggggcgagacccggcaacgcctgacgcgg
cggatgtggcagcagttgggcgaggagcgctga
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