Pelecanus crispus (Dalmatian pelican): 104023863
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Entry
104023863 CDS
T08340
Symbol
LIG4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
pcri
Pelecanus crispus (Dalmatian pelican)
Pathway
pcri03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pcri00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
104023863 (LIG4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pcri03400
]
104023863 (LIG4)
Enzymes [BR:
pcri01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
104023863 (LIG4)
DNA repair and recombination proteins [BR:
pcri03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
104023863 (LIG4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT
DNA_ligase_IV
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
AAA-ATPase_like
DUF2948
SKA1
Motif
Other DBs
NCBI-GeneID:
104023863
NCBI-ProteinID:
XP_009475966
LinkDB
All DBs
Position
Unknown
AA seq
912 aa
AA seq
DB search
MASAPASQPSPKKTVASRVPFADLCFTLERIQTCKSRPEKTKYFKDFLDSWRKFHDALHQ
KEKDVTDSFYPAMRLILPQLERERMAYGIKETMLAKLYIELLNLPKGGKDAAKLLNYRTP
TGSRGDAGDFAMVAYFVIKPRSPKQGRLTIEQVNEHLDAIANNNAAKNKGLVKKSLLQLI
TQSTALEQKWLIRMIIKDLKLGVSQQTIFSIFHPDAIELHNVTTDLEKVCRQLHDPSVSL
SDVSIMLFSAFKPMLAAIADVQQIEKQMNNQIFYIETKLDGERMQMHKDGDVYKYFSRNG
FDYTQQFGASPLDGSLTPFIHNVFKSNIQNCILDGEMMAYNPETQTFMQKGNRFDIKRMV
EDSDLQTCFCVFDVLMVNNQKLAHEVLSKRYEILSSVFTPVTGRIHVVSKKSARTRKEVI
DALNEAIDNREEGIMVKDPMSTYKPDKRGEGWLKIKPEYVSGLMDELDLLIVGGYWGKGS
RGGMMSHFLCAVAETPPPNEKPSVFHSICRVGSGYTMKELYDLGLKLAKHWKPYHRKDPP
CNILCGTEKPEVYIEPCNSVIVQIKAAEIVNSDMYKTDCTLRFPRIEKIRDDKEWYECMT
SDMLEDLRSKAEGKLASKHLYIDEYDEPQEKKKKTVSKVKKIIGIAEQFKAPDLSNVSKV
SNVFEDVEFCVMTGMGKFSKSELESRIAECGGSVVQNPGPETYCVIVGAENVRVKNIIAS
NKYDVVRAEWLLQCFQTKMLVPWQPAFMIHMSPDTKEHFARVYDCYGDSYTADTDVAQLK
EVFSRMKDNRVMPLDMIAEVEERYSWNSCQLSIFRGNTIYVDCYAVVNEPRTKIHGTTLS
IRALELRFYGAKVVSRLQEGISHVVIGEDHSRVKQVKTLRRTFGKKFKIVSELWVTESVE
DGVPKNENQYLI
NT seq
2739 nt
NT seq
+upstream
nt +downstream
nt
atggcttctgcacctgcttcgcagccttctcctaaaaaaacggtggcctctcgcgtccct
tttgcagatctgtgtttcactctggagcgaatacagacatgtaaatctcgtccggagaaa
accaaatatttcaaggatttcctggattcctggagaaaattccatgatgctcttcatcaa
aaagagaaagacgtcacagattctttttacccagctatgcgacttattcttccacagttg
gaaagagaaaggatggcgtatggaattaaagaaactatgcttgcgaagctgtatattgaa
ctgcttaatttaccaaaaggtggaaaagatgctgcaaagcttttaaattacagaacacct
actggctcacgtggagatgctggagattttgcaatggttgcatactttgtgataaaacct
aggagcccaaaacaaggcagactgacaatagaacaagtcaacgaacacttggatgcgata
gctaataataatgctgctaaaaacaagggtctggtaaagaaaagtcttcttcagttaatt
acccagagcacagcactggaacaaaaatggctcatccggatgattataaaggatctaaag
cttggtgttagtcaacaaactatattttccatttttcatcctgatgctattgaattacac
aacgtcacaactgatttggaaaaagtttgcagacaactacatgatccctctgtctcactt
agcgatgtttctatcatgttgttttctgcctttaaaccaatgcttgctgctattgctgat
gtccagcaaattgagaaacaaatgaacaaccagatattctacatagaaactaagctggat
ggtgaacgtatgcagatgcacaaagatggagatgtgtataaatatttttcccgaaatggg
tttgactatactcagcagtttggtgcttccccccttgatggttcattaacgccatttatt
cataatgtatttaagagcaatatacaaaattgcattctggatggtgaaatgatggcttac
aatcctgagacgcaaaccttcatgcaaaaaggaaacagatttgacataaaaagaatggtg
gaggactccgatctgcagacgtgcttctgtgtgtttgatgtattgatggttaacaatcag
aagttggctcatgaagtactaagcaagaggtatgaaatcttaagtagcgtatttacccca
gtaacgggcaggatacatgttgtaagtaaaaaaagtgccaggacgagaaaagaagtaatt
gatgctttaaatgaagcaatagataacagagaggaagggattatggtgaaagatccgatg
tctacctacaagcctgacaaacgtggggaaggctggttaaaaatcaagccagaatacgtc
agtgggctgatggatgaactagaccttttaattgttggtggttactggggaaagggctca
cgtggtggaatgatgtctcattttctgtgcgctgttgcagagacgccccctccaaatgaa
aaacctagcgttttccactctatttgtcgtgttggctctggctatactatgaaggaattg
tatgatttaggtttgaaactggctaaacactggaagccctaccataggaaggaccctccc
tgtaacattttgtgtggaactgaaaaacctgaggtgtacattgagccttgcaactctgtc
atagttcagatcaaggcagctgagattgttaacagtgatatgtacaaaactgactgtact
ttgaggttcccccgaattgagaagataagagatgacaaagaatggtacgagtgcatgact
tcagatatgttagaagatctcagaagcaaagcagaagggaagctggcatctaagcacctt
tacatagatgagtatgatgagccacaagagaaaaaaaagaaaactgtatcaaaggtgaag
aagataattggaatagctgagcaatttaaagctcctgatctttctaatgtaagcaaggtt
tcaaatgtatttgaagacgttgagttttgtgttatgacaggaatgggaaaattctcaaag
tctgaactggaaagcagaatagccgagtgtggtggcagcgtggtacagaacccggggccg
gagacttactgtgtcattgtaggagctgagaatgttagagtgaaaaacatcattgcttcc
aacaaatatgatgtggtgagggcagagtggctccttcagtgttttcaaaccaaaatgctg
gtgccgtggcagccagcctttatgattcacatgtctcctgacacaaaagaacattttgct
cgtgtgtatgattgttatggagacagctacacagcagacacagatgttgcacaactcaag
gaagtgttctcaagaatgaaggacaatagggtgatgcctttggacatgattgcagaggta
gaggaacgttattcatggaatagttgtcagctcagtatattcagaggaaacactatttat
gtggactgttatgctgttgttaatgagcccagaaccaaaatccatggaacaacactgtca
attagagctttggagctccgtttttatggtgcaaaagtagtctctcgccttcaagagggc
atctcccatgttgttataggagaagatcattcccgggtaaaacaggtaaaaacactcagg
agaacatttgggaaaaaatttaaaatcgtatctgagctgtgggtaacagagtctgtggag
gacggagtcccaaagaatgaaaatcagtacttaatttaa
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integrated database retrieval system
