Candidatus Protochlamydia amoebophila: PC_RS06105
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Entry
PC_RS06105 CDS
T00172
Name
(GenBank) unnamed protein product
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pcu
Candidatus Protochlamydia amoebophila
Pathway
pcu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PC_RS06105
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcu03019
]
PC_RS06105
03009 Ribosome biogenesis [BR:
pcu03009
]
PC_RS06105
Enzymes [BR:
pcu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PC_RS06105
Messenger RNA biogenesis [BR:
pcu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PC_RS06105
Ribosome biogenesis [BR:
pcu03009
]
Prokaryotic type
rRNA helicases
PC_RS06105
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
Microtub_bd
Motif
Other DBs
NCBI-ProteinID:
CAF23989
UniProt:
Q6MBR0
LinkDB
All DBs
Position
complement(1531833..1533056)
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AA seq
407 aa
AA seq
DB search
MQEQIDVELLPQEPNGFITFNLDPLILKALDKMNFKEPSRIQTEAIPLIQKKQDLIALSQ
TGSGKTATCAIPICNRVNTELTDIQALIIVPTRELALQYATETQKIGKYKGVKAFAIFGG
EDSALQQSKLKHGVQVLVATPGRLIDFIYSRQIDLSHVETLILDEADEMLSMGFYDDLVF
IIQCLNHSHQTLLFSATMPAAIQRLAKHHMKDPQEVNLILEQASPHLLEHCFVYCLAHQR
DHELIQLIKENNPTQAIIFCQSRFQVEKVCRTLQSHLDGVDFLHAGLNQDIRTIVTNKFR
TGKIRLLVATDIVARGLDFSKVSHVFIYQLSHESDVYVHRSGRTGRYGKTGVVISLVTSR
ELPYLNAILKQIKQEPRWIGCPPPEKQEAAKPRKRRPYPNKKSSKPH
NT seq
1224 nt
NT seq
+upstream
nt +downstream
nt
atgcaagaacaaatagatgtagaattgcttcctcaagagcccaatggatttataactttt
aatttagatcctttaattttaaaagcactagataaaatgaattttaaagagccttctcga
attcaaacagaggctattccactgattcaaaaaaaacaagatctcatcgctctttcacaa
acaggttctggaaaaacagccacttgtgctatcccgatttgtaatcgtgtaaatacggaa
ctgacagatattcaagctctgatcattgtcccaacaagagaattagccttgcaatatgca
acagaaacacaaaaaattgggaaatataaaggagttaaagcgttcgcaatttttggggga
gaagattcagctttgcagcaatctaaacttaaacatggtgtacaagtcttagtagccact
cctggacgtttaattgactttatttattcgcgacaaattgatttgtctcatgtggaaacc
ttgatactagatgaagctgatgaaatgttaagcatggggttttacgatgatcttgttttt
attattcaatgcttaaaccactctcatcaaacattattgttttcagcaacgatgccagct
gcgattcaacgtttagctaagcatcacatgaaagatcctcaagaggtgaatttaatttta
gaacaagcaagccctcacctattagagcattgttttgtttattgcttagcgcatcaaaga
gaccatgagcttatccaactcattaaagagaataatcccacgcaagctattattttctgt
cagtcgcggtttcaagtagaaaaagtgtgtcgtactttacagtcgcatttagatggagta
gattttttacatgcgggattaaatcaagatattcgcactattgtgacaaataagtttcgg
acaggtaagattcggctgctcgtcgcaacggatattgttgccagaggtttggatttttct
aaagtgagccatgtttttatttaccaactttctcatgaatctgatgtttatgtgcatcga
tctggaagaacagggcgatatgggaaaactggagtagttatttctttggtgacctctagg
gaactaccatatttaaatgctattctaaaacagattaaacaggagcctcgttggattgga
tgcccaccgcctgaaaaacaggaagctgctaaacctcgaaaaagacgcccttaccccaat
aaaaaaagttctaagcctcattaa
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