Pseudomonas cucumis: PSH97_09610
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Entry
PSH97_09610 CDS
T09632
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pcuc
Pseudomonas cucumis
Pathway
pcuc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pcuc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PSH97_09610 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pcuc03400
]
PSH97_09610 (mfd)
Enzymes [BR:
pcuc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PSH97_09610 (mfd)
DNA repair and recombination proteins [BR:
pcuc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
PSH97_09610 (mfd)
BRITE hierarchy
Motif
Pfam:
TRCF
UvrB_inter
DEAD
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
SNF2-rel_dom
ERCC3_RAD25_C
AroM
AAA_22
Motif
Other DBs
NCBI-ProteinID:
WLG86753
UniProt:
A0AA49R949
LinkDB
All DBs
Position
complement(2112442..2115891)
Genome browser
AA seq
1149 aa
AA seq
DB search
MPVLRLPLLPAAAGKQHWGNLPGAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELSF
FAPDLPVLHFPDWETLPYDLFSPHQDIISQRISSLYRLPELEHGVLVVPITTALHRLAPT
KFLLGSSLVLDVGQKLDVEQMRSRLEASGYRYVDTVYEHGEFTVRGSLIDLFPMGSKLPF
RIDLFDDEIETLRTFDPENQRSIDKVDTVRLLPAREFPLQKDAVTRFKARFRERFDVDFR
RCPIFQDLSSGITPAGIEYYLPLFFDETSTLFDYLPQDTQVFSLPGIEQAAENFWNDVRN
RYEERRVDPSRPLLPPAELFLPVEDCFARLKSWPRVVASQQDVETGVGRERFPAQPLPNL
AIEAKATQPLAALAGFLDQFPGRVLFTAESAGRREVLLELLERLKLRPKTVDSWPDFVAS
KERLAITIAPLDEGLLLDDPALALVAESPLFGQRVMQRRRREKRADANNDAVIKNLTELR
EGAPVVHIDHGVGRYLGLTILEIDNQAAEFLTLEYAENAKLYVPVANLHLIARYTGSDDA
LAPLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFADPKADYATFSAGFP
FEETPDQQTTIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVAILVPT
TLLAQQHYNSFRDRFADWPVSVEVMSRFKSTKEVNAAVADLAEGKIDIVIGTHKLLQDDV
KIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIAT
PPARRLSVRTFVMEQNKSTVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPEARI
GIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLHQ
LRGRVGRSHHQAYAYLLTPPRQQITPDAEKRLEAIANTQDLGAGFVLATNDLEIRGAGEL
LGDGQSGQIQAVGFTLYMEMLERAVKSIRKGEQPNLDQPLGGGPEVNLRVPALIPEDYLP
DVHARLILYKRIASATDEEGLKDLQVEMIDRFGLLPEPTKNLVRITALKLQAEQLGIKKV
DGGPQGGRIEFAAQTPVDPLTLIKLIQSQPKRYKFEGATMFKFQVPMERPEERFNTVEAL
FERLIPTTA
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
gtgcccgttctgcgtctaccgcttctccctgccgcggcaggtaaacagcactggggcaac
ctgcccggtgccgccctgagcctggccatcgccgaggccgccagcgctgccaagcgcttt
accctgctactgaccgccgacagccagagtgccgaacggctggaacaggagctgagtttc
ttcgccccggatttgcctgttctgcatttccccgactgggaaaccctgccctacgacctg
ttctcgccacaccaggacatcatctctcagcgcatctccagcctgtatcggttgccggag
ctggagcatggcgtgctggtcgtgccgattaccacggccctgcaccgcctggcgccgacc
aaattcctgctcggcagcagcctggtgctggacgtcggccagaagcttgatgtcgagcaa
atgcgcagccgtcttgaagccagcggctatcgttacgtcgataccgtctatgagcacggc
gaattcaccgtgcgcggctcgctgatcgatctgttcccgatgggcagcaaattgcccttc
cgtatcgacctgttcgacgacgaaatcgaaacactgcgtaccttcgatccggaaaaccag
cgctccatcgacaaggtggacactgttcgcctgctgccggcgcgggagttcccgctgcaa
aaggacgcagtcacccgtttcaaggcgcgcttccgtgagcgtttcgatgtcgatttccga
cgctgcccgatctttcaggatttgagcagcgggattacaccggccggtatcgagtactac
ttgccgctgttcttcgacgaaacctccacgctgttcgattatctgccccaggacacgcaa
gtgttctccttgccgggcatcgaacaggccgcggaaaacttctggaacgacgtgcgcaat
cgttacgaagagcgtcgcgtcgacccatcccgtcctttattgccaccggccgagctgttc
ctgcccgtagaagactgctttgcccgtctgaagagctggccccgcgtggttgccagtcaa
caggacgtggaaaccggtgtcggtcgcgagcgcttcccggctcagccgctgccgaacctg
gccatcgaagccaaggccactcagccgttggcggcgctggccggtttcctcgaccaattc
cctggccgcgtgctgtttaccgccgagtccgcgggccgtcgtgaagtgctgctggaattg
ctggaacgcctgaagctgcgaccgaaaaccgtcgacagctggccagactttgttgcgagc
aaggagcgcttggcgatcaccatcgcgccgctcgacgaaggtctgttgctggacgatcca
gccctggccctggtcgctgaaagcccattgttcgggcagcgcgtgatgcagcgccgtcgc
cgcgagaaacgcgccgacgccaacaacgatgcggtgatcaaaaacctcaccgagctgcgc
gaaggcgctccggtggtgcacatcgatcatggtgtcggccgttatctgggtctgacgatt
ctggaaatcgacaatcaagccgccgaatttctgacccttgaatatgccgagaacgccaag
ctgtacgtcccggtagccaacctgcacctgatcgcccgctataccggcagcgacgatgcc
ctggcgccgctgcaccgcctcggctccgagacctggcagaaagccaaacgcaaagccgcc
gaacaggtgcgcgatgtggccgccgagttgctcgacatttatgcccgccgcgccgctcgc
gagggttatgccttcgccgacccgaaagccgattacgcaaccttcagcgccggcttccca
tttgaagaaaccccagaccagcagaccaccatcgaagcggtgcgcgccgacatgctcgca
ccgaaaccgatggatcgcctggtttgcggcgacgtcggtttcggcaagaccgaagtggcg
atgcgtgcggcgttcattgcggtgcacggcggtcgtcaggtggcgattctggtaccgacc
accctgctcgcccagcagcactacaacagcttccgcgaccgcttcgccgactggccggtg
agcgtggaagtgatgagccgcttcaagtcgaccaaggaagtcaacgccgcggtcgcggac
ctggccgaaggcaaaatcgacatcgtcatcggcacacacaaactgctgcaagacgacgtg
aagatcaaaaacctcgggctggtgatcatcgacgaagagcaccgtttcggtgtccgtcag
aaagaacagctcaaagcactgcgcagtgaagtcgacatcctgacgctgaccgccacgccc
attccgcgcacgctgaacatggcagtgtcgggcatgcgtgatctgtcgatcatcgccacg
ccacccgcccgtcgcctgtcggtgcgcacgttcgtcatggagcagaacaagagcacggtc
aaagaggccctgctgcgtgagttgctgcgtggcgggcaggtctactacctgcacaacgac
gtgaagaccatcgagaaatgcgccgccgacctcgccgaactggtgccggaagcacggatc
ggcatcggtcacgggcagatgcgcgaacgtgaactcgaacaggtgatgagcgacttctat
cacaagcgcttcaacgtgctgatcgcctcgaccatcatcgagaccggcatcgacgtgccg
agcgccaataccatcatcatcgagcgtgccgacaagttcggcctggcacagttgcaccag
ttgcgtggccgcgtcggtcgcagccaccaccaggcgtatgcttacctgctgacaccgccg
cgccaacaaatcactcccgacgcggaaaaacgcctggaagcgattgccaatacccaggac
ctcggcgcgggcttcgtactcgccaccaacgacctggaaatccgtggcgccggcgaactg
ctgggcgatggccaaagcgggcagatccaggccgtcggtttcacgctgtacatggaaatg
ctcgagcgcgcggtaaagtcgatccgcaagggcgaacagccgaacctcgatcaaccgctg
ggtggtggtccggaagtcaatctgcgtgtaccggcgttgattccagaggactatctgcca
gacgttcatgctcgattgattctctacaaacgcattgcctcggccaccgacgaggaaggt
ctcaaggacctgcaagtggagatgatcgaccgtttcggcctgctgccggaaccgaccaag
aacctggtgcggatcacggcgctgaaattgcaggccgaacagctgggcatcaagaaagtc
gacggcggcccgcagggcggtcgtatcgagttcgccgcacagacaccggtcgatccactg
acgctgatcaaactgatccagagccagcccaagcgctacaaattcgaaggcgccacgatg
ttcaagttccaggtgccgatggagcgcccggaagaacgctttaatactgtagaggcgcta
ttcgagcgcctcattccgaccactgcttga
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integrated database retrieval system
