Paenibacillus crassostreae: LPB68_16330
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Entry
LPB68_16330 CDS
T05196
Name
(GenBank) 23S rRNA (uracil-5-)-methyltransferase RumA
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
pcx
Paenibacillus crassostreae
Brite
KEGG Orthology (KO) [BR:
pcx00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pcx03009
]
LPB68_16330
Enzymes [BR:
pcx01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
LPB68_16330
Ribosome biogenesis [BR:
pcx03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
LPB68_16330
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
Methyltransf_25
Methyltransf_15
MTS
Met_10
PrmA
Methyltransf_11
Cons_hypoth95
Methyltransf_12
Methyltransf_32
Ubie_methyltran
Methyltransf_23
N6_N4_Mtase
RrnaAD
TPMT
Motif
Other DBs
NCBI-ProteinID:
AOZ93602
UniProt:
A0A167AU45
LinkDB
All DBs
Position
3543691..3545163
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AA seq
490 aa
AA seq
DB search
MRKHRSGRSSDRHSNPAPLIGLPVTKNDEVVIDIVGMNHDGDGVGRVEGYTLFVRGALPG
ESVLVKVLKTKKQYGYAKLLNIIVQSPDRIEVPYSIKDQYGGCQLQHMDYNAQLIWKRQL
VINNLVRIGKLDVLDEQVSGEAAEQGIKVHDTIGMDNPWRYRNKAQVPIGESDGELVAGF
YARGSHRIIDMDVCLIQHETIDQILNLVKTIGRKLGITAYNEETGQGLLRHVVVKVAFRT
GEIMVVLVTNGAKIPNVDTWIAEITKSMPAVTSICQNINTKQTNVIFGDKTNVLWGNEVI
YDYIGDVKFAISARSFYQVNPVQTEVLYRKTLDYAGLTGAETVIDAYCGIGTISLFLAQH
AKKVYGVEIVPEAIEDARANAKLNGMTNVEFEVGASEDVIPRWKEQGITPDVIVVDPPRK
GCDPRLLETILTMQPERVVYVSCNPSTLARDLRVLEDGGYRTVEVQPVDMFPHTVHVECV
VRIYREDVTN
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
atgagaaaacaccgtagcggtcgctcatccgaccgccatagcaatcctgctccattgatt
ggattgccggttaccaagaacgacgaagtcgtcatcgacattgtcggtatgaaccatgac
ggagatggggttggccgtgtagaaggctataccctatttgtgcggggggctctcccaggg
gagagcgttctggtgaaagttctgaaaaccaagaagcaatatggttatgctaaactatta
aatatcatagttcagagccctgatcgtattgaagtgccctattcgatcaaggatcaatat
ggtggatgtcagctacaacatatggattacaacgcacaattgatatggaagcgtcagtta
gtaataaacaacctagtgcgcattgggaaattagatgtactagatgaacaagtgagtggg
gaagctgcagaacaagggattaaggtacatgatacaatcggcatggacaatccttggcgt
tatcgcaataaagcccaagtccccatcggagaatctgatggagagcttgtagcgggcttc
tatgcccgaggaagtcatcgtattatcgatatggatgtatgccttatacagcatgagacc
attgatcaaatccttaatcttgttaaaactatcggtcgtaagcttggtatcacagcttat
aacgaggaaacaggacaaggtttacttcgccatgttgtcgttaaagtggccttccgtaca
ggagaaataatggttgtcttagtaacgaatggtgcgaagataccgaatgttgacacctgg
attgccgagattaccaagtctatgccagctgtgactagtatatgtcagaatatcaatacg
aagcagacgaacgtcatcttcggtgataagactaatgtattgtgggggaatgaagtcatc
tacgattatattggtgacgtgaaatttgccatctccgcacgttcattctatcaagtgaat
ccagtccagactgaagtgctgtataggaaaacactggattatgcgggacttacaggagca
gagaccgtcattgatgcctactgtggcatcggaacgatatcgttgttcttagctcaacat
gcgaagaaagtctatggcgtagaaattgtccctgaggcaatcgaagatgcacgggctaat
gctaagttgaacggtatgaccaatgtcgaattcgaagtcggcgcttcagaggatgtcatt
cctcgctggaaggagcaagggatcacgccggatgtgatcgtcgtagatccacctcgtaag
ggctgtgatccgcgcttactagagacgatcctaacgatgcaaccggagcgggtggtgtac
gtgagttgcaacccatcgacattagcgcgcgatctgagagtgctcgaggatggcggttat
cggacggttgaggtgcaaccggtggatatgttcccgcatacggtgcatgtggagtgcgtg
gtaaggatatatcgagaggatgtaacaaattaa
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