Phoenix dactylifera (date palm): 103695637
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Entry
103695637 CDS
T03274
Name
(RefSeq) zinc finger CCCH domain-containing protein 45-like isoform X1
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
pda
Phoenix dactylifera (date palm)
Pathway
pda03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pda00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
103695637
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pda03021
]
103695637
03019 Messenger RNA biogenesis [BR:
pda03019
]
103695637
Transcription machinery [BR:
pda03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
103695637
Messenger RNA biogenesis [BR:
pda03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
103695637
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
zf_CCCH_4
Torus
zf-CCCH
zf-CCCH_2
zf-CCCH_3
Motif
Other DBs
NCBI-GeneID:
103695637
NCBI-ProteinID:
XP_008775232
UniProt:
A0A8B7BEY3
LinkDB
All DBs
Position
12:14362873..14405722
Genome browser
AA seq
696 aa
AA seq
DB search
MEDAEGALSFDFEGGLDAGAPAHASSAPASLMPSDPTAAAANAGAVATPVAGDAASTGGN
IPGRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKARMPVCRFFRIYGECREQDCVYKHTN
EDIKECNMYKLGFCPNGPDCRYRHAKLPGPPPPVDEVFQKIQHLSAFNYGSSNRYFQHRN
TSYNQQSERPQLSQGSAVANQNAAAKPPIPVELSNVQQPQSQIQQSQQPPQPPADNQVQH
ISNGLSKQATRTASPLPQGQSRYFIVKSCNRENLEISVQQGVWATQRSNEAKLNEAFESS
ENVILIFSINRTRHFQGCAKMTSKIGGYVGGGNWKYAHGTAHYGRNFSVKWLKLCELSFN
KTHHLRNPYNDNLPVKISRDCQELEPFIGEQLASLLYLEPDSELMAMLIAAESKCEEEKA
KGVSTDEAADNPDIVLFEDNEEEEDEESEEEDESSGQSAQGRGRGRGMMWQPHMPPVRGG
RPMLGVRGFPPVMMGADGFGYGDGFATPDFFGVPPRVFGPYGGPRFSGDFSGTGSMSGLV
FPGRPPQPSAIFPMGGLGMMMGPGRAPFMGGMVMRGVGRATRPMGVPPFLHPPPPLPNTR
AAKRDQRRPASDWSDMHEPGLDQGSKGQEMTGPSHGVDDEMVSHHGAKAQTEGKFVSANS
FQNDSESEDEAAPRRSRHGEGKRKRPGSEGEAALDQ
NT seq
2091 nt
NT seq
+upstream
nt +downstream
nt
atggaggacgccgagggagccctcagcttcgacttcgagggcggcctcgacgccggcgcc
ccggcccatgcctcctcggccccggcctccctgatgccgtccgacccgacggctgccgcg
gcgaatgcaggtgccgtggcgacccccgtcgccggagatgcggcttccaccggagggaac
atcccgggcaggcggagcttccggcagacggtgtgccgccactggctccgcagcctctgc
atgaagggcgacgcctgcggtttcctccaccagtatgacaaggcgcggatgcctgtctgc
cgattcttccgcatttatggggagtgccgtgagcaggattgtgtctataagcacaccaat
gaggatatcaaggagtgcaacatgtacaaattgggtttctgcccaaatggtcctgattgt
cggtataggcatgcaaagctgcctggacctcctccccctgttgatgaggtctttcagaag
attcaacatctgagtgctttcaactatggctcttcaaatagatattttcagcataggaac
actagttataaccaacaatcagaaaggcctcaattgtcacaaggttctgcagtagctaat
caaaatgcagcagcgaaaccaccaattccagttgaactgtccaatgtacaacagccacaa
tctcaaattcagcagtcacaacaaccaccacagccacctgctgacaatcaggtgcagcat
atttcaaatggcttgtcgaaacaagccactagaactgcatctccactccctcaagggcaa
tctaggtattttattgttaaaagttgcaaccgagaaaatctggaaatatccgttcagcag
ggtgtttgggcaactcaaaggagtaatgaggctaaacttaatgaagcttttgaatcctca
gagaatgttattttgatattctcaatcaacagaactcgacatttccagggttgtgccaag
atgacatctaagattggtggatatgttggcggagggaattggaaatatgctcatggaact
gcacattatggtcgaaacttttcagtcaaatggctaaagctatgcgagttgtccttcaat
aaaacacatcatctcaggaatccctacaatgacaacttaccagtgaagataagtcgagac
tgtcaagagttggagccttttattggtgaacagttggcttctttgctttatcttgagcca
gatagtgaactcatggcaatgctgattgctgcagaatctaaatgtgaggaggaaaaagca
aagggagttagtacagatgaagcagctgataatccagatattgtcctttttgaggacaat
gaagaagaggaggatgaagaaagcgaggaagaggatgagagcagtggccagagtgcccaa
ggaaggggtagaggaagaggaatgatgtggcagccacacatgccaccggtgcgtggaggg
aggccaatgcttggggtccggggtttccctcctgtcatgatgggtgctgatggatttggt
tatggtgatggctttgctacaccagatttttttggcgttcctccccgggtttttggacca
tatgggggtcccagattttctggtgacttctcaggaacaggctccatgtctgggttagtt
ttccctggtaggccaccccagcctagtgccatttttccaatgggtggccttggaatgatg
atgggcccaggtcgggcaccattcatgggtggtatggtgatgagaggtgttggtcgagcc
actcgtccgatgggagtgccgcctttcctccatccgcctccacctctacccaacactagg
gctgcaaagagagatcaaaggagacccgcaagtgattggagtgacatgcatgagccagga
ttggatcagggcagcaagggtcaggaaatgacaggccctagccatggagtagatgatgag
atggtgtctcatcatggtgcaaaggcccaaactgagggtaaatttgtttctgcaaacagt
ttccagaatgatagtgagagtgaggatgaggcagcaccaagacggtcgaggcatggcgaa
ggaaagaggaagcggcctgggtctgagggtgaagcagccttggaccagtaa
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