Phoenix dactylifera (date palm): 103697841
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Entry
103697841 CDS
T03274
Name
(RefSeq) general transcription factor IIH subunit 2-like isoform X1
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
pda
Phoenix dactylifera (date palm)
Pathway
pda03022
Basal transcription factors
pda03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pda00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
103697841
09124 Replication and repair
03420 Nucleotide excision repair
103697841
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pda03021
]
103697841
03400 DNA repair and recombination proteins [BR:
pda03400
]
103697841
Transcription machinery [BR:
pda03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
103697841
DNA repair and recombination proteins [BR:
pda03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
103697841
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ssl1
C1_4
VWA_2
IBR
VWA
zinc_ribbon_9
Motif
Other DBs
NCBI-GeneID:
103697841
NCBI-ProteinID:
XP_038979096
UniProt:
A0A8B8ZXQ9
LinkDB
All DBs
Position
2:complement(14928713..14946403)
Genome browser
AA seq
439 aa
AA seq
DB search
MSGSVAVHRGSLGFPAMGGGEERRKRGGDDEEEEEEEEEENGVRGMEAWERAYADERSWE
ALQEDESGLLRPIDTKTLVHAQYRRRLLLRSAAASSAAPRIQKGLIRYLYVVIDLSRAAS
EMDFRPSRMVVVAKCVEVFIREFFDQNPLSHIGMVTIKDGVAQCLTDLGGSPDSQIKSLL
GKLECSGDASLQNALELVYGYLSQIPSYGHREVLILYSALNTCDPGDIMETVQQCKKAKI
RCSVIGLSAEIYICKHLCEETGGSYTVALDESHFKELLLEHAPPPPAIAEYAAANLIRMG
FPQRGADGVISICSCHKEAKVGGGYTCPRCKARVCELPTECQICGLTLVSSPHLARSYHH
LFPVTPFNEVSSRIPTKWSQKLPQTCYGCQQSLVSHGGKSDPHVSCPKCNQHFCLDCDIY
IHESLHNCPGCESQHGSTT
NT seq
1320 nt
NT seq
+upstream
nt +downstream
nt
atgagcggcagtgtcgcagtccaccgcggcagcctcggctttccggcgatgggaggagga
gaggaaaggagaaagcgaggcggagacgacgaggaggaggaagaggaggaggaggaggag
aatggtgtccgggggatggaggcgtgggagcgggcctacgccgacgagcgatcgtgggag
gcgctccaggaagacgagtcgggcctcctccgccccatcgacaccaagaccctcgtccac
gcccagtaccgccgccgcctccttctacgatccgccgccgcctcctccgccgccccccgg
atccagaagggcctcatccggtacctctacgtcgtcatcgacctctcccgggcagcttca
gagatggattttcgccctagtcgaatggttgtggttgcaaaatgtgttgaggtattcatt
agggaattctttgatcagaatccattgagtcatattggtatggtcaccataaaagatggt
gttgcccagtgcctaactgatttaggtggcagcccagattcacagattaaatctttactt
ggcaagcttgaatgttctggtgatgcttccttgcagaatgccctagaacttgtctatgga
tatctgagccagatcccatcatatggtcaccgggaagtcttaatcttgtactctgctctc
aatacctgtgatccaggagatataatggagacagtccagcaatgtaagaaagccaaaata
aggtgctctgttatcggcctgtcagcagaaatttacatatgcaagcatctttgtgaggaa
actgggggttcatatactgtggcattggatgagtctcatttcaaggaattgttactggag
catgccccaccgccccctgcaatagcagaatatgcagctgccaatttgatcaggatgggt
tttcctcagagaggagcagatggtgttatttctatttgttcttgtcacaaagaagcaaag
gttggtggagggtacacctgccctagatgcaaggcacgcgtgtgtgagctaccaactgaa
tgtcagatttgtggattgacacttgtttcttctcctcatttagcaaggtcttatcatcat
cttttcccagtgacaccattcaatgaggtgtcttccaggattccaactaaatggagtcag
aagttaccacaaacttgttatggttgccagcagagccttgtgagccatgggggtaaatcc
gatccccatgtttcctgtccgaaatgcaatcaacacttctgccttgactgtgatatctat
atccatgagagcttgcacaattgccctggttgcgagagtcagcatggctcgactacataa
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