Phoenix dactylifera (date palm): 103698213
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Entry
103698213 CDS
T03274
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB2 isoform X1
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
pda
Phoenix dactylifera (date palm)
Pathway
pda03022
Basal transcription factors
pda03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pda00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
103698213
09124 Replication and repair
03420 Nucleotide excision repair
103698213
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pda03021
]
103698213
03400 DNA repair and recombination proteins [BR:
pda03400
]
103698213
Transcription machinery [BR:
pda03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
103698213
DNA repair and recombination proteins [BR:
pda03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
103698213
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
Motif
Other DBs
NCBI-GeneID:
103698213
NCBI-ProteinID:
XP_008778431
UniProt:
A0A8B7BJF0
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All DBs
Position
18:4130769..4139905
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AA seq
451 aa
AA seq
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MPEVRIVAKNFMDMVAALPAMKLDKLYSSTFICEAVLRSLPPLAKKYVLQMLFVDSPVTA
KSMEEWLLADGYSKHKVAIDRLLQLRIFLEVNDRKKETSYKMNTKFQSNMQKYLVFGGTL
PREPMPLSVTVRLPTLEDLEVYALEQWECFLLQLINSAQAERSTSFSSSMMRVFQRGLLS
ARENGAPKLTENGFQFLLMDTNAQLWYIIREYISSSEDRGVDPTDLISFLLELSFHTLGE
AYNLNTLTDVQKHAIKDLADLGLIKLQQGRKESWFIPTKLATNLSVSLSDSSSRKEGFVV
VETNFRMYAYSSSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFENGITAEQIISFL
QQNVHPRVATKTPVIPENVTDQIRLWETDRNRVEIIPSHLYEDFPSKEIFEAVCDFAREI
GGLLWEDSKKMRLIVRGEYHQHMRDFLRHQK
NT seq
1356 nt
NT seq
+upstream
nt +downstream
nt
atgccggaggtgcggatcgtggcgaagaattttatggacatggtggcggcgctgccggcc
atgaagctcgacaagctctacagcagcaccttcatctgcgaagccgtcctcaggtctttg
cctcctctggctaagaagtatgttttgcaaatgctattcgttgattccccagtaacagcc
aagtcaatggaagaatggctccttgctgatggatattccaagcacaaagtggcgattgat
cggttacttcagctgagaatcttccttgaagtcaatgatagaaaaaaggagactagttac
aagatgaacacgaagttccagagtaatatgcaaaaatatttggtgtttggtggaacttta
ccgagagagccgatgcccttaagtgtcactgtgagattgccaacattggaagatttagag
gtctacgctctagaacaatgggagtgcttcttgttgcaacttataaactcagctcaagcg
gaaagatcaacaagcttcagttcatctatgatgagagttttccagcgaggacttttgagt
gcaagggaaaatggagctccaaagctaacagagaatggcttccagttccttctgatggat
acaaatgcccaactttggtacataataagagaatatatctcttcctctgaggatcgtgga
gtggatccgacggatttaatatcctttctccttgagcttagttttcatacccttggagag
gcatataatttaaataccctaactgatgttcaaaaacatgctatcaaagaccttgcggac
ctgggattaatcaaacttcaacagggcagaaaggaaagttggttcatacctactaagttg
gctactaatctttcagtgagcctatcagattcatcatcacgtaaagagggttttgtagta
gtggagacaaacttcaggatgtatgcctattcgtcatccaaattacattgtgagattcta
cgcctcttttcaaggattgaatatcaacttcctaacctgattgttggagctataacaaaa
gaaagtctctataatgcgttcgagaatggcattactgcagagcagattatttctttcctt
cagcagaacgtgcatcctcgagttgcaacgaagacaccggtgattccagagaatgtcaca
gatcagattagactgtgggaaactgatcgaaatagggttgagattattccttcacatctt
tatgaagattttccatcaaaggagatctttgaagcagtatgcgactttgcaagggagatt
ggtggattgctgtgggaagattcaaagaagatgaggttaattgtccggggagaataccac
caacacatgcgagattttctccgtcatcaaaagtaa
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