Phoenix dactylifera (date palm): 103712979
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Entry
103712979 CDS
T03274
Name
(RefSeq) THO complex subunit 1
KO
K12878
THO complex subunit 1
Organism
pda
Phoenix dactylifera (date palm)
Pathway
pda03013
Nucleocytoplasmic transport
pda03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pda00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103712979
09122 Translation
03013 Nucleocytoplasmic transport
103712979
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pda03019
]
103712979
03041 Spliceosome [BR:
pda03041
]
103712979
Messenger RNA biogenesis [BR:
pda03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
103712979
Spliceosome [BR:
pda03041
]
Complex C
Other components
EJC/TREX
103712979
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
103712979
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
efThoc1
Ribosomal_S21
Motif
Other DBs
NCBI-GeneID:
103712979
NCBI-ProteinID:
XP_008797925
UniProt:
A0A8B7CF13
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All DBs
Position
5:17282122..17311839
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AA seq
652 aa
AA seq
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MAEAPSGLRILLHQHVKERAPVHVSSHADRDRVLEVFRNVILKTEPPENFALQAVQEAIK
PQRQTVLVQDENQSLENALRALLQELVSAAVQSGERTMQYGQSIDDGENIRGQIPRLLDI
VLYLCERGHVEGGMIFQLLEDLTEMSTMKDCKEVFAYIESKQDILGKQELFGRGKLVMLR
TCNQLLRRLSKANDVVFCGRILMFLAHFFPLSERSAVNIKGVFNTSNETKYEKDAPVGVA
VDFNFYKTFWSLQEHFSNPASTTLAPSKWQKFASNLRVVLDTFEAQPLGDDNGNVNNLEQ
EEATFSIKYLTSSKLMGLELKDPSFRRHILLQCLILFDYLKAPGKNDKDGPLESMKEEIK
TCEERVKKLLEIIPPKGKEFLESIEHILEREKNWVWWKRDGCPAFEKQAIEKKIGQDGTK
KRKPRWRLGNKELSQLWKWADQNPNALTDPQRVHMPSVAKYWKPLADDMDDSAGIEAEFH
HKNNRVYCWKGLRFSARQDLEGFSRFTDHGIEGVVPPELLPPDVRSKFHAKPSEKTKRAK
KEEVKVAAAQSEDNQVAMPVAETDGGGNGTELEDGVAPMDSDAAAVEESQKQSPEMDSGH
EAGQSEAETEAEAENRSDIKVEAVTGAVREVDPDTDPNPLSKDSHGGDRENP
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atggcggaagctccgtccggcctccggatccttctccaccagcacgtcaaagagcgcgcc
cctgttcacgtctccagccacgccgaccgagaccgagttctggaagtatttagaaatgtt
atattgaagaccgagcccccagaaaattttgctctccaggctgtgcaagaagctataaaa
cctcagagacaaactgtattggtccaagatgagaatcaatctctggaaaatgctcttcga
gcattacttcaagaactagtgtcagctgcagttcaatcaggtgagaggacgatgcaatat
ggacaatcaattgatgacggagaaaatattcgtgggcaaataccacgccttcttgacatt
gtgctgtatctttgtgaaagagggcatgttgaaggtggtatgatattccaactattagaa
gatttaacagaaatgtcaaccatgaaagactgcaaagaagtttttgcatatattgagagc
aagcaagatatcttggggaagcaagagctctttgggcgaggaaagcttgtcatgctgagg
acatgcaatcagcttcttcgaagactttcaaaggcaaatgatgtggtattttgtggacgt
attcttatgtttcttgcccattttttcccattatcagagcgctcagctgttaatattaag
ggagtcttcaacacatcaaatgaaacgaagtatgaaaaagatgctcctgtcggggttgca
gttgattttaacttctacaagaccttttggagtttacaggagcattttagtaatccagct
tccacaacacttgccccatccaaatggcaaaagtttgcatctaacttaagggttgtatta
gatacatttgaagctcagcctttgggtgatgacaatggaaatgtgaataatcttgaacaa
gaggaagctacattcagcattaagtacttgacaagcagtaaattaatggggttagagttg
aaagatcctagctttcgccgccatatccttcttcaatgccttatattgtttgactatcta
aaggcacctgggaagaatgacaaagatgggcccctagaaagcatgaaagaagaaattaaa
acttgtgaagagcgtgtcaagaaacttctagagattattccaccaaaagggaaggagttt
cttgaaagcatagaacatatattggagcgggagaagaattgggtttggtggaaacgagat
ggttgtccagcatttgaaaaacaagcaattgagaaaaagataggtcaagatggaacgaaa
aaacgtaagccaaggtggagactaggaaacaaggaattatctcaattatggaaatgggca
gatcaaaatcctaatgctctgacagatcctcagcgtgttcatatgccttcagtcgccaag
tactggaaaccccttgcagatgacatggatgattctgctggaattgaagccgaatttcat
cataaaaataatcgtgtttactgctggaaaggccttcgtttttcagctagacaagatctg
gaaggattttctagattcactgatcatggaattgaaggagttgtgcctccagaacttcta
cctccagatgttcgttccaagtttcatgctaaacctagtgagaagacaaaacgagctaaa
aaggaggaagtaaaagttgctgcagcacagtctgaagacaaccaggttgcaatgccagta
gcggagactgatggtggcggtaatgggactgagctagaagatggggtggctcctatggat
tctgacgctgcagctgtagaagaaagtcagaagcagagtcctgagatggactctggccat
gaggctgggcagtctgaagctgaaacagaagctgaagctgaaaacagaagtgatatcaaa
gtggaggctgtaactggggcggtgagagaagtagatccagatacagatcccaatccactg
agcaaagattcacatggtggggatagagaaaacccgtaa
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