KEGG   Phoenix dactylifera (date palm): 103712979
Entry
103712979         CDS       T03274                                 
Name
(RefSeq) THO complex subunit 1
  KO
K12878  THO complex subunit 1
Organism
pda  Phoenix dactylifera (date palm)
Pathway
pda03013  Nucleocytoplasmic transport
pda03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pda00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    103712979
  09122 Translation
   03013 Nucleocytoplasmic transport
    103712979
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pda03019]
    103712979
   03041 Spliceosome [BR:pda03041]
    103712979
Messenger RNA biogenesis [BR:pda03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     103712979
Spliceosome [BR:pda03041]
 Complex C
  Other components
   EJC/TREX
    103712979
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    103712979
SSDB
Motif
Pfam: efThoc1 Ribosomal_S21
Other DBs
NCBI-GeneID: 103712979
NCBI-ProteinID: XP_008797925
UniProt: A0A8B7CF13
LinkDB
Position
5:17282122..17311839
AA seq 652 aa
MAEAPSGLRILLHQHVKERAPVHVSSHADRDRVLEVFRNVILKTEPPENFALQAVQEAIK
PQRQTVLVQDENQSLENALRALLQELVSAAVQSGERTMQYGQSIDDGENIRGQIPRLLDI
VLYLCERGHVEGGMIFQLLEDLTEMSTMKDCKEVFAYIESKQDILGKQELFGRGKLVMLR
TCNQLLRRLSKANDVVFCGRILMFLAHFFPLSERSAVNIKGVFNTSNETKYEKDAPVGVA
VDFNFYKTFWSLQEHFSNPASTTLAPSKWQKFASNLRVVLDTFEAQPLGDDNGNVNNLEQ
EEATFSIKYLTSSKLMGLELKDPSFRRHILLQCLILFDYLKAPGKNDKDGPLESMKEEIK
TCEERVKKLLEIIPPKGKEFLESIEHILEREKNWVWWKRDGCPAFEKQAIEKKIGQDGTK
KRKPRWRLGNKELSQLWKWADQNPNALTDPQRVHMPSVAKYWKPLADDMDDSAGIEAEFH
HKNNRVYCWKGLRFSARQDLEGFSRFTDHGIEGVVPPELLPPDVRSKFHAKPSEKTKRAK
KEEVKVAAAQSEDNQVAMPVAETDGGGNGTELEDGVAPMDSDAAAVEESQKQSPEMDSGH
EAGQSEAETEAEAENRSDIKVEAVTGAVREVDPDTDPNPLSKDSHGGDRENP
NT seq 1959 nt   +upstreamnt  +downstreamnt
atggcggaagctccgtccggcctccggatccttctccaccagcacgtcaaagagcgcgcc
cctgttcacgtctccagccacgccgaccgagaccgagttctggaagtatttagaaatgtt
atattgaagaccgagcccccagaaaattttgctctccaggctgtgcaagaagctataaaa
cctcagagacaaactgtattggtccaagatgagaatcaatctctggaaaatgctcttcga
gcattacttcaagaactagtgtcagctgcagttcaatcaggtgagaggacgatgcaatat
ggacaatcaattgatgacggagaaaatattcgtgggcaaataccacgccttcttgacatt
gtgctgtatctttgtgaaagagggcatgttgaaggtggtatgatattccaactattagaa
gatttaacagaaatgtcaaccatgaaagactgcaaagaagtttttgcatatattgagagc
aagcaagatatcttggggaagcaagagctctttgggcgaggaaagcttgtcatgctgagg
acatgcaatcagcttcttcgaagactttcaaaggcaaatgatgtggtattttgtggacgt
attcttatgtttcttgcccattttttcccattatcagagcgctcagctgttaatattaag
ggagtcttcaacacatcaaatgaaacgaagtatgaaaaagatgctcctgtcggggttgca
gttgattttaacttctacaagaccttttggagtttacaggagcattttagtaatccagct
tccacaacacttgccccatccaaatggcaaaagtttgcatctaacttaagggttgtatta
gatacatttgaagctcagcctttgggtgatgacaatggaaatgtgaataatcttgaacaa
gaggaagctacattcagcattaagtacttgacaagcagtaaattaatggggttagagttg
aaagatcctagctttcgccgccatatccttcttcaatgccttatattgtttgactatcta
aaggcacctgggaagaatgacaaagatgggcccctagaaagcatgaaagaagaaattaaa
acttgtgaagagcgtgtcaagaaacttctagagattattccaccaaaagggaaggagttt
cttgaaagcatagaacatatattggagcgggagaagaattgggtttggtggaaacgagat
ggttgtccagcatttgaaaaacaagcaattgagaaaaagataggtcaagatggaacgaaa
aaacgtaagccaaggtggagactaggaaacaaggaattatctcaattatggaaatgggca
gatcaaaatcctaatgctctgacagatcctcagcgtgttcatatgccttcagtcgccaag
tactggaaaccccttgcagatgacatggatgattctgctggaattgaagccgaatttcat
cataaaaataatcgtgtttactgctggaaaggccttcgtttttcagctagacaagatctg
gaaggattttctagattcactgatcatggaattgaaggagttgtgcctccagaacttcta
cctccagatgttcgttccaagtttcatgctaaacctagtgagaagacaaaacgagctaaa
aaggaggaagtaaaagttgctgcagcacagtctgaagacaaccaggttgcaatgccagta
gcggagactgatggtggcggtaatgggactgagctagaagatggggtggctcctatggat
tctgacgctgcagctgtagaagaaagtcagaagcagagtcctgagatggactctggccat
gaggctgggcagtctgaagctgaaacagaagctgaagctgaaaacagaagtgatatcaaa
gtggaggctgtaactggggcggtgagagaagtagatccagatacagatcccaatccactg
agcaaagattcacatggtggggatagagaaaacccgtaa

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