Pocillopora damicornis (lace coral): 113675155
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Entry
113675155 CDS
T05773
Name
(RefSeq) DNA ligase 4-like
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
pdam
Pocillopora damicornis (lace coral)
Pathway
pdam03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pdam00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
113675155
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pdam03400
]
113675155
Enzymes [BR:
pdam01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
113675155
DNA repair and recombination proteins [BR:
pdam03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
113675155
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT
BRCT_2
DNA_ligase_A_C
RNA_ligase
DNA_ligase_IV
mRNA_cap_enzyme
PTCB-BRCT
LIG3_BRCT
Motif
Other DBs
NCBI-GeneID:
113675155
NCBI-ProteinID:
XP_027047499
LinkDB
All DBs
Position
Unknown
AA seq
920 aa
AA seq
DB search
MAGVSTVEVATQVPFYDLCALLEKIASTTGTEKKKKILEFFVNSWREAHAKLHGTSKTTD
SFHSGMRLLLPHLDKERGAYGMKEVVLAKYYIEILSIGKDSTDGRKLLNYRAPKNAKQDS
VADFASVAYFVLRNRCPEKGSLKIDQVNKYLDQLASANIDHKRDEAKKALQLLLRNTSAL
EQKWLIRIIFKELKIGLSENSVFNVYHPDAMELFGVCNSLPKVCMDLHDRSIRMNEAEMS
LFSPFRPMLAERKHINEVEKVMNNQSFYIETKIDGERMQLHKDKDSFMYFSRSANEYTHV
FGGDPSSGVLTPHIAGCFSSSVHSCILDGEMVVVDPKTDTWLSKGMNVDVKSLTAYENDE
GHHPCFIVFDILIINEKKLANVPLRERIKFMEDMLNPKPGYLQFVERQEVVSKEDVVKAL
NTAIDKREEGLVVKSPSSVYKPNSRSGSGWVKIKPEYVDSLSDELDLVIVGGYFGVGRRS
GMTSHFMCAVAVPSNVPGEHPKVFHSFCKVGSGYTINELRELDQQLRPHWNAFDTKKPPE
SIILAPGFKEKPDVWIEPSKSKIVQIKAAEIITSDKFKTGVTLRFPRLEAVRSDKMWYEC
LNLNELTRLKSVAEGKLTYQHVNAEEKSEPAKKRRREAVRVEQSRTVAKHFKPADVSSVE
EVSQMFQEKEFYIVNGPSSHPKAVLEKKVAENGGTLTQNPCSDTLCVVAERINVRVKNII
SQDKYDVVKASWLINCLDSGELKPWIPSDMFHSSSRTADKFAEEFDRHGDSYTEFATAES
LRKAFDNVQSKNSAVPLSTDEILEISQRYFPDNSPFGLFKHCRVYLDQFIIIGNKSTGIP
NSSLELIGLKLRMFGARITDSFDSKVTHVVFDERDLCRLKELQRVTQDREVKQHLVTLDW
VTQSIQAEKLLPERHFRPVT
NT seq
2763 nt
NT seq
+upstream
nt +downstream
nt
atggcgggagtttcaacagtagaagtagcaactcaggttccattttatgatttgtgtgct
ttgttagaaaagattgcaagcacaacaggaactgaaaagaagaaaaagatcttggaattc
tttgtcaattcatggagagaagcgcacgctaagttgcatggaacttcgaaaacaactgac
tcatttcactctggtatgcgcctgttgctgcctcatcttgacaaagaacgaggtgcttat
gggatgaaggaggtggttcttgcaaaatattacattgaaatattaagtatagggaaagac
tctacagatggccgtaaactgctgaattacagagcacccaaaaatgccaaacaggattct
gtggctgactttgcaagtgttgcttactttgttttaagaaacagatgtcctgagaaagga
agtttaaagattgaccaagtaaacaagtaccttgaccagctggcctcagcaaatattgat
cataaacgtgatgaagctaagaaagctctacagctactgctacgtaacacaagtgctctg
gaacagaaatggttaatcaggataattttcaaggaattgaagattggccttagtgagaac
tctgtatttaatgtttatcatccagatgcaatggaactgtttggagtctgtaacagtcta
cccaaggtttgcatggatcttcatgatcgcagtattaggatgaatgaagcagagatgtct
ttattctcaccatttcgaccaatgttggctgaaagaaaacacatcaacgaggtggagaag
gtaatgaacaatcagtcattttacatagaaaccaaaatagatggagagagaatgcagctt
cataaagacaaagacagttttatgtacttctcaagaagtgcaaatgaatacactcatgta
tttggtggggacccatcctctggagttctcacacctcacatcgctggttgcttctcaagc
tctgtacattcatgcatcctggatggagaaatggttgttgttgatccaaagacagacaca
tggctatcaaagggaatgaatgttgatgtgaaatccttaaccgcttatgaaaacgatgaa
ggtcatcatccttgcttcattgtgttcgatattcttatcattaatgagaaaaaactggca
aatgttcctttgcgagaaagaattaaattcatggaagacatgctgaatccaaagcctgga
tatctccagtttgttgagagacaagaagtcgtttctaaggaagacgtcgtgaaagctctt
aacactgcgattgacaagagggaggaaggcttggttgtaaagtcaccgtcctctgtttat
aaaccaaattcaagaagtggcagtggctgggtgaagattaaaccagaatatgtagacagc
ctaagtgatgagctggatctcgtcattgttggtggctattttggagttgggcgccgaagt
ggaatgacatctcactttatgtgtgcagtggcggttccttccaacgttccaggtgaacat
cccaaagtgttccattctttctgcaaggtggggtctggttacactattaatgagttgcgc
gaactggatcagcagttgcgtccacactggaatgcatttgatactaaaaagcctccagaa
tcaatcattctggcccctggattcaaggaaaaacctgatgtgtggattgaaccgtccaaa
tcaaagatagttcagattaaagctgcagaaataattacatcagacaagtttaaaactggt
gtgactcttcgctttccacggctggaagctgttcgcagtgacaagatgtggtacgagtgt
ttgaacctaaacgaactgaccaggctgaaatcggtggcagagggaaagctcacataccaa
catgtaaatgcagaggagaaatctgaaccagccaagaaaagaaggcgagaggctgtacga
gttgaacagtcacggactgtggccaagcattttaaaccggcggatgtgtcttcagttgag
gaggtttcgcaaatgttccaggaaaaggaattttatattgttaacggtccttcctcgcat
cccaaggctgttttagaaaaaaaagttgccgagaatggaggcacgttgactcagaaccct
tgttctgacactttatgtgttgtggctgagagaatcaacgttagagttaagaatattatc
agtcaggacaaatacgatgtggtgaaggcatcttggcttattaactgcttggatagtggc
gagctgaagccgtggattccaagtgatatgtttcattcctcgtcccgaactgctgataaa
tttgccgaggagtttgatcgacatggagacagttacacagaatttgctacagccgagtca
ctcaggaaagcgtttgataatgtccaaagcaagaactcagcagttccactttcaactgat
gaaatacttgaaatatctcaacgttattttcccgataactcgccttttggattgttcaaa
cattgcagagtgtaccttgatcagttcattattattgggaataaatcaacgggaattcct
aatagcagtttggagcttattggtttgaaactacgcatgttcggggcacggatcaccgac
agttttgatagcaaagtgactcatgtcgtcttcgatgaaagggatctttgtcgcctcaaa
gagctacaaagagtaacgcaagatagagaagtaaaacaacatcttgttacgctagactgg
gttacgcaatcaattcaagctgaaaagcttctaccggaaagacacttcagaccagttacg
taa
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