Pocillopora damicornis (lace coral): 113684755
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Entry
113684755 CDS
T05773
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11-like
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
pdam
Pocillopora damicornis (lace coral)
Pathway
pdam03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pdam00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
113684755
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pdam03021
]
113684755
03019 Messenger RNA biogenesis [BR:
pdam03019
]
113684755
Transcription machinery [BR:
pdam03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
113684755
Messenger RNA biogenesis [BR:
pdam03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
113684755
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CID
VHS
zf_UBZ
CFIA_Pcf11
Motif
Other DBs
NCBI-GeneID:
113684755
NCBI-ProteinID:
XP_027057952
LinkDB
All DBs
Position
Unknown
AA seq
1294 aa
AA seq
DB search
MDTGDEGICEEYASSLEDLTFNSKPLINVLTMLAEENSQYAENITKLIEKRICQVSQQFK
LPSLYLLDSIVKNVGGGYLKLVADIMENSFTCVFEKADEKTRRDLYKLRHTWQQYFPAKM
LHDLDVAVNKHDPGWPISPAPPPSPSIHINPKFLPKAEKTGAVLTGSIATPQEHKVVVDH
QQRLHELQRLQEEQLKLTELEIQEHQMKRDLLLKKQQQERKLLLQQQQQQILHLRLKPES
TKDSVLLNGPPNSTLSEPVSTKAETTEKMQETLSSRDPRIRQIEPEPDHIPEPKHFGDSS
QQDLKTVPIPKIKSVQHMPVAANSSEGSNRVPSGTHLEREVTGSPKYGDLQKPSKPKSTH
KRRNSGDWSSHSPNHENHKDEPEDIQDMRGKARRGRRRSVERQRERGKGERGRGRGHEPG
KRGREMDHEKTERRINRVPDRDSRHTLTAGRHDEMNHPFRDDFRKRNKNFLPQKEHLMNQ
ENWRRSAAEIPNVDERSRLGKRGPEGPSRRDRYIDKDFRGSKSPLYGREEFVRKGSPGIR
EERPRGNGYEREQYENVEHFKPHQSSHEMQQDPDFQFREEVRGHPPVPFHDDPRERHLGE
PLSKKPRPLLSDVEITELRNRKGALPNTGRMTPPPVFHEGFLGEPMDIHPHPMDAEHPLP
RDHNFGPQGPGMRREFRPRTPPRQQHPGEWTPGFEIPRELMLDHQNEIMRQAESRLQAGD
LTVEQHEDLVDKLHQLYELQRHPDAMLLSRESRPPPNSEYLPRHMMSSRLEEPPFRPGGP
LDRPGTPPEIGPGRPIAPRYDGPPEHLRIQNRGPAAMEPGHMMRVDDPRFEAKEPEMRRF
NEDYRGPHTEVDRPSLGRPLPVGGPSIRTDRPFDNSPRVDGGLNPQFPHGRHVEEIVRHP
GSHENSPGSVVTPSTPPRQEKGQEVPITPNTMMEKRSVDDLFRKLMDFGIIKVMPEPVSE
PPQHVALPAPPQAEIQKPRPLPGPPVSLPGLSLPAITAEQTKPPKVEKPVIPPIKLVPED
LKKRHDSVIASLYDGTQCSSCGLRFPGEAAKIYREHLDWHFRKNRREKDGRRVAHRQWYF
VVKDWLNYEEISDPDERAKSSFFDISKGAVDSPDPLKETEKEFADGSCPVLAGDTEAEAE
CDICCEKFEQFWEETNEEWHYKSAVRIDGKTYHYLCYQDVKEAQIQTEEDENEQEKDDEN
VNTSLEEKSPTKDGAKTEQKSPQNGEAKAEVEHAGGRDREPKIPQNKEASESNPQKGETD
KSDAESSTCEGKGVVSLSSNVNENKENETKGDET
NT seq
3885 nt
NT seq
+upstream
nt +downstream
nt
atggatactggggacgaaggtatttgtgaggaatatgcctcatcgcttgaagacttgact
tttaattctaaaccactgattaacgtgctcacgatgcttgccgaagaaaatagtcaatat
gccgagaacataacaaagcttattgaaaaacgcatttgtcaggtatcacaacaattcaaa
ctaccttcactttatttgcttgattccatcgtgaagaatgttggaggagggtacctgaag
cttgttgcagatattatggaaaatagttttacctgtgtatttgaaaaggcagatgagaag
actcgtcgagatctgtacaagttgcggcatacttggcagcagtattttccagcgaagatg
ttgcatgacttggatgttgctgtgaataagcatgacccaggatggcccatttctcctgct
cctccaccaagtccctctatacatattaacccaaagtttctgccaaaggctgaaaaaact
ggtgcagttttaactggcagcatagctacaccccaggagcataaggttgttgttgaccac
cagcagcgcttgcatgagttacagagactgcaagaagaacagcttaaactgacggaactt
gagattcaggagcaccagatgaaaagagatcttcttctcaaaaagcaacaacaggaacga
aagctccttctccaacaacaacagcagcaaattctccacttgcgattgaagccagaaagt
acaaaagactcagtacttttaaatgggcctcccaattctacactaagtgaaccagtgtca
acgaaagcagagactacagagaaaatgcaagagacacttagtagccgtgatccacgcatc
cgccaaattgagcctgaacctgatcatattccagagccaaaacattttggtgattcttca
caacaagatttgaaaactgtcccaatccccaagataaaaagtgttcagcatatgcctgtg
gcagccaattcatcagaaggctcaaatagagttccttcaggaactcatcttgaaagggaa
gttacaggtagtccaaagtatggtgacttgcaaaagccatcaaaacctaagagtacacac
aaaaggcgaaattctggtgactggtcaagccactcaccaaatcatgaaaaccacaaagat
gagccggaagatattcaagatatgagagggaaagctcgaaggggaagaagaaggtctgtt
gaaaggcagagagaaagaggaaaaggtgagaggggaagaggtcgtggccatgaaccagga
aaaaggggaagagaaatggatcatgaaaaaactgagcgtagaattaacagagtgccagac
agagactcccgacatacactaactgctgggagacatgatgaaatgaatcatccttttcgg
gatgattttaggaaaaggaataaaaattttttgccccagaaagagcatttaatgaatcag
gaaaactggaggaggagtgcggcagaaataccaaatgtggatgaaagatcacggcttgga
aaacgtggccctgaggggccatccaggagagacagatacatagataaagatttcagaggt
agcaaaagtccactctatggtcgtgaggaatttgttcggaagggaagtccaggaatacgt
gaagagagaccaaggggaaatggatatgaaagagaacaatatgaaaatgttgaacacttt
aaaccacatcaaagcagtcatgaaatgcaacaagatccggactttcaatttagagaggaa
gtgcgtggccatcctccagttccttttcatgatgacccaagagagagacatctgggagaa
cctctatcaaagaaaccaagacctcttctctctgatgtagagataactgaacttcggaac
agaaagggggcactccccaatacaggaagaatgacaccaccacctgttttccatgaaggt
ttccttggagaacccatggatattcacccacatcctatggatgctgaacatcctctacct
cgggatcataactttgggcctcaaggtccaggaatgcggagagaatttagacctcgtact
ccacctaggcaacaacatcctggagaatggactccagggtttgaaattccacgtgagctc
atgttggatcatcaaaatgaaatcatgaggcaggctgaaagtcgtcttcaagcaggagat
ttgactgtggagcaacatgaagatttagtggataaacttcaccaattgtatgagctccaa
aggcatcctgatgcaatgcttctgtcacgagagagcaggcctccaccaaattctgaatac
ttacctagacatatgatgtcctcaagattagaggaacctccattcagaccagggggtcca
ttggataggccaggaactccgcctgaaataggtcctggaagaccaattgccccaagatat
gatggtcctccagagcatctcagaatacaaaacagaggtcctgctgccatggaaccaggc
cacatgatgagggttgatgaccccagatttgaagctaaggaacctgaaatgaggagattc
aatgaggattacagaggaccgcacacggaagtggatcgcccctcacttggtagaccattg
ccagtgggtggtccttccataagaacggacagaccatttgacaatagtccaagggttgat
ggtgggttgaaccctcagtttccacatgggaggcatgtggaggagattgtacgacatcca
ggtagtcatgaaaacagcccagggtccgtagtaacacccagcacaccaccaaggcaggaa
aaaggccaagaagtaccgatcactcccaacactatgatggagaagaggtctgttgacgat
ctcttccgaaaactgatggatttcggaataatcaaggtgatgcctgaacctgtcagtgaa
ccccctcagcatgtcgccttaccagctccccctcaggctgagatacaaaaaccacgaccc
ctccctggaccaccggtttctcttcccggcctctcactaccagccataactgcagaacag
acgaaacctccaaaagtggagaaaccagtcattccaccgataaaacttgttcccgaggac
ctcaaaaagcgtcacgatagtgttatcgccagtctttacgatggcacgcaatgttcatct
tgtgggctgcggtttcctggtgaagctgcaaagatctaccgtgagcacttggattggcat
ttccgtaaaaaccgccgagagaaggacggcaggagagtggcacacaggcagtggtacttt
gttgttaaggactggcttaattacgaagagatatcggatccagacgaaagagcaaagagt
tcgttctttgatatcagcaagggggctgtagactctccagatccgttgaaggaaacagaa
aaggagtttgcagatggtagctgtcctgtgcttgctggtgacacagaagctgaagcggaa
tgcgacatctgttgcgagaaatttgagcaattctgggaagagactaatgaagagtggcat
tataagtctgccgttcgcattgatggcaagacgtaccattatttgtgctatcaagacgtc
aaagaggcccaaattcaaacagaagaggacgaaaatgagcaggagaaagacgatgaaaac
gttaacacttctttggaagaaaaatcgccgacaaaagatggagcaaagacagagcaaaaa
tctccgcaaaacggtgaagcaaaggcagaagtggaacacgcgggaggtcgtgatagggaa
ccaaaaatacctcagaataaagaggcgtccgaaagcaaccctcaaaaaggagagactgat
aaatcagatgcagagtcttcgacatgtgaaggaaagggcgtggttagtttgtctagtaat
gttaatgaaaataaagaaaatgaaacgaagggtgatgaaacatag
DBGET
integrated database retrieval system
