Clostridioides difficile 630: CDIF630_03580
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Entry
CDIF630_03580 CDS
T03885
Name
(GenBank) transcription antiterminator, PTS operon regulator
KO
K19505
sigma-54 dependent transcriptional regulator, gfr operon transcriptional activator
Organism
pdc
Clostridioides difficile 630
Brite
KEGG Orthology (KO) [BR:
pdc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pdc03000
]
CDIF630_03580
Transcription factors [BR:
pdc03000
]
Prokaryotic type
Helix-turn-helix
Other families
CDIF630_03580
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
PRD
AAA
AAA_5
Sigma54_activ_2
AAA_22
RuvB_N
EIIA-man
Mg_chelatase
AAA_16
AAA_2
AAA_14
NACHT
nSTAND3
Torsin
ABC_tran
TsaE
RNA_helicase
DUF4890
Motif
Other DBs
NCBI-ProteinID:
AJP13053
UniProt:
Q180C4
LinkDB
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Position
complement(3822306..3825062)
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AA seq
918 aa
AA seq
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MRDEILSFVNECVLFNNFDELKKESGIITEDIVKKFNLSRTQSSRLLNDLVKSDNLIKIN
SRPVIFLPKNKINDVVGPTKKSIYENLDELKNECKLLKQETVFNSIIGYDNSLKEVIEQI
KTAVLYPNGGLTIMLTGESGVGKTFLAKIIYKYSVSSNVLEKNSPYNVLNCAQYYNNLEL
LSSLLFGHVKGAYTGANESRAGLIEQSDGGVLFLDEVHRLNSEGQEKLFTFMDTSTFSRI
GENGVIRKARVRLIFATTESLSEFLQTFLRRIPINIYVPNIEERGTIEKRKIVEHFIYEE
SKVLGLPIEITQITLNAILKIKFKGNIGECKNVIKYACGRAYAKNQRRNGNIFVTLQDLP
RNLYIENVDIFQFQSGKSKSIIFSPKQFSIEMSNGRNKRNIIYQSFIKCLDYFDRLEKNE
ITKEKFSKKSSNLMIRLMDNLVFSNNDENNNVLMELIISIMQDIFRNLEVNNNIKYDGNN
VLAFSSYLYLKDESYQLSDEYKALENKLLIYLKKESYKEYSIISKISTLITNRLDMYLNN
VDTIIMIIFIKSTIIRMKFNQVNATIIAHGYATASSMANVCNRMLGKNIFTAIDMPIDAT
IADVSKQMSRYLEGDRIKNGLIVLFDMGSLNLIYEDLKNKINSPMLFIDQISTISALEVG
NLLMQGKNIEEIAEIMDEETKPNIQLYYPQKNKEYAIISSCFTGIGTAIKIQHLLSESLI
GIVDVKIIPYDYDSLVSMGDKEPVFEMYDVMAIVGTANPNVNGVDFILLEDIISGKGEDD
VFRIFSRVVENEKIKNINDSIVKNFSLIRVIDSLTILDSKKIIERIEEGINAIENIQKKK
LSNDKKISLYVHLSCMIERLVRQTEIEEYTDMDLLIKNHHSEVKLIKNAFSVLEKSYSVQ
IPISEIGYIYNIIYGLPQ
NT seq
2757 nt
NT seq
+upstream
nt +downstream
nt
atgagggatgaaattttaagttttgtaaatgaatgtgtattatttaacaactttgatgaa
cttaaaaaagaaagtggcataataacagaagatatagtaaaaaagtttaatttaagtaga
actcaatcaagtagattattaaatgatttagtaaaatctgataatcttataaagataaac
agtagacctgttatttttttacctaaaaataaaataaatgatgtagtaggacctacaaaa
aaaagtatttatgaaaatttagatgaacttaaaaatgagtgtaaattattaaagcaagag
actgtgtttaatagtatcataggatatgataatagcttaaaagaagtaatcgaacaaata
aaaaccgctgtactttatccaaatggcggacttacaataatgctgacaggtgaaagtgga
gtaggaaaaacttttttagccaagataatatacaaatatagtgtaagcagtaatgtatta
gaaaaaaattctccatacaatgtgttaaactgtgcgcagtattataataatttggagtta
ttgtctagtctattatttgggcatgtaaaaggagcatatactggagcaaatgaatctaga
gcaggtctaatagaacaatcagatggtggtgttttatttttagatgaagtacatagatta
aatagtgaaggtcaggaaaagttatttacatttatggatacaagtacgttttctaggatt
ggagagaatggagtaattagaaaagctagggtaagattaatatttgctacaacagaaagt
ctatctgaatttttacaaacctttttaagaagaatacccataaatatttatgttcccaat
atagaagaaagagggactattgaaaaaaggaagattgtagaacattttatttatgaagaa
agtaaggtacttggtttgcctatagagataactcaaattacattaaatgcgattttaaag
ataaaattcaaggggaatataggtgaatgtaaaaatgtaataaaatatgcatgtggacga
gcttatgcaaaaaatcaaagaagaaatggaaatatttttgttactcttcaagaccttcct
agaaatctttatatagaaaatgtagatatatttcaattccaaagtggtaaaagcaaaagc
attatcttttctcctaaacaatttagtattgaaatgtcaaatggaagaaataaaagaaat
ataatctatcaaagtttcataaaatgtttagattactttgatagactagaaaaaaatgaa
ataacaaaggaaaaatttagtaaaaagagttctaatctaatgattagactaatggacaat
ttagtcttttcaaataatgatgaaaataataacgtacttatggagcttataatatcgata
atgcaggatatatttagaaatttagaagttaataacaatataaaatatgatgggaataat
gtattggcattttcgtcttatctttatttgaaggacgaatcttatcaattgtctgatgag
tataaagctttagaaaataaattactaatatatttaaaaaaagagagttacaaagaatac
tctataataagtaaaatatcaacattaataacgaatagattggatatgtatcttaataat
gtagatacaatcataatgattatatttattaaatcaacaattataagaatgaaatttaat
caagttaatgcgactattatagcacatggatatgctactgccagtagtatggcgaatgta
tgtaatcggatgttgggtaaaaatatatttacagctattgatatgcctatagatgctact
attgctgatgtatcaaaacaaatgtctagatacctagagggagataggataaagaatggt
ttaattgtattatttgatatgggctctcttaatcttatatatgaagatttaaagaataag
ataaatagcccaatgttatttatagaccaaatatccactatttctgcactagaagtagga
aatttattaatgcaaggtaaaaacattgaagagattgcagaaattatggatgaagaaact
aaacctaatatacaattgtattatcctcaaaaaaataaagaatatgctataatatcatct
tgttttacagggataggtactgctataaaaatccaacatctactttccgaaagtttaatt
ggaatagttgatgtcaaaataataccttatgattatgatagtcttgtttctatgggagat
aaagaaccagtttttgaaatgtatgatgtgatggctatagtaggaactgccaatccaaat
gtgaatggggtagattttatattattagaggatataatatcaggaaaaggagaagatgat
gtttttagaatatttagcagagtagtagaaaatgaaaaaataaagaacataaatgattct
attgtaaagaatttttcattaattagagtaatagatagtctaactattttagattcaaaa
aagataatagagagaatagaagaaggaattaatgctatagaaaatattcaaaagaaaaaa
ctttcaaatgataaaaagatttctttatatgttcacttaagttgtatgattgaaagatta
gttagacaaactgaaattgaagagtatactgatatggatttgttaatcaaaaaccatcat
agtgaagtaaaactaataaaaaatgcatttagtgtgctagaaaagagttatagtgtgcaa
ataccaatttcagagataggatatatttataatattatctatggtctaccacagtaa
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