Pseudoxanthomonas daejeonensis: MNQ95_00585
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Entry
MNQ95_00585 CDS
T08066
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pdd
Pseudoxanthomonas daejeonensis
Pathway
pdd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pdd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MNQ95_00585
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdd03019
]
MNQ95_00585
03009 Ribosome biogenesis [BR:
pdd03009
]
MNQ95_00585
Enzymes [BR:
pdd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MNQ95_00585
Messenger RNA biogenesis [BR:
pdd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MNQ95_00585
Ribosome biogenesis [BR:
pdd03009
]
Prokaryotic type
rRNA helicases
MNQ95_00585
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
adh_short
AAA_19
Motif
Other DBs
NCBI-ProteinID:
UNK57656
LinkDB
All DBs
Position
complement(122593..124545)
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AA seq
650 aa
AA seq
DB search
MSTPDQENPAALRFGDLGLPEPLMAALASVGYESPSPIQAATIPALLAGRDVLGTAQTGT
GKTAAFALPVLAGLDLSKTKPQALVLAPTRELAIQVAEAFQRYATRMPGFNVLPIYGGQG
YGPQLAALRRGVHVVVGTPGRVIDHLNRGTLDLSELKCLVLDEADEMLRMGFIDDVEAVL
LKTPPTRQVALFSATMPPPIRRIAQTYLKDPTEVTIEAKTTTAANIRQRYWFVSGMHKLD
ALTRIIEAEPFDAMIVFARTKAGTEELAQKLQARGQAAAAINGDIQQQQRERTIQQLKDG
KLDVLVATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRTGDAILFVTPREK
GMLRAIERATRQPIEEMRLPTVEAVNDRRVARFFEKISGALEAGGLEPYRELMDRYAGEH
DVGSNEIAAALAKLLQGETPLFLEAREPAPAPRFERPSRDSGNDERRGPRPPRSNDEGFT
PRPPRPHGSDATSRPQRTHDSDFAARPARAPDSEFGARPPRAAKPPRSAPDTGMETYRVE
VGHAHGVKPGNIVGAIANEAGLESRFIGRIDIHDDHSILDLPEGMPPEIMSHLQKAWVVG
QQLRITRWDGSHAPAAQAPKSFRPQGARPGKPGNGPPRPHRKGPPKPHGG
NT seq
1953 nt
NT seq
+upstream
nt +downstream
nt
atgtcaacccccgatcaagaaaaccctgccgccctgcgcttcggcgacctcggcctgccc
gaaccgttgatggccgcgctggcctccgtcggttacgaatcgccgtcgccgatccaggcc
gccacgattcccgccctgctggcgggtcgcgacgtgctgggcaccgcccagaccggcacc
ggcaagaccgccgcgttcgcgctgccggtacttgcggggctggacctgtccaagaccaag
ccgcaggccctggtgctggcacccacgcgcgaactggccatccaggtcgccgaggcgttc
cagcgctacgccaccaggatgcccggcttcaatgtcctgccgatctacggcggccagggc
tacggcccgcagctggcggcgctgcgccgcggcgttcatgtggtggtgggcaccccggga
cgggtgatcgaccacctcaaccgtggcacgctggacctgtccgagctgaagtgcctggtc
ctggacgaagccgacgagatgctgcgcatgggtttcatcgacgatgtcgaggccgtgctg
ctgaagaccccgccgacgcgccaggtggcgctgttctcggcaacgatgccgccgccgatc
cggcgcatcgcccagacctacctcaaggatccgaccgaagtcacgatcgaggccaagacc
acgaccgcggccaatatccggcagcgctactggttcgtcagcggcatgcacaagctcgac
gcgctgacccggatcatcgaagccgagccgttcgacgcgatgatcgtgttcgcccggacc
aaggccggcaccgaggagctggcgcagaagctgcaggcgcgcggccaggccgccgcggcg
atcaacggcgacatccagcagcagcagcgcgagcgcaccatccagcagctcaaggacggc
aagctcgacgtgctggtcgccaccgacgtggccgcgcgcggcctggacgtggagcgcatc
agccatgtgctgaactacgacatcccgtacgacaccgaaagttacgtgcaccggatcggc
cgcaccggccgcgccggccgcacgggcgacgcgatcctgttcgtcaccccgcgcgagaag
ggcatgctgcgcgcgatcgagcgcgccacccgccagccgatcgaagagatgcgcctgccg
acggtggaagcggtcaacgaccgccgcgtggcgcgtttcttcgagaagatttccggcgcg
ctggaagccggcggcctggagccgtaccgtgagctgatggaccgctacgccggcgagcac
gacgtgggttccaacgagatcgccgccgcgctcgcgaagttgctgcaaggcgagacgccg
ctgttcctcgaggcgagggagccggcgccggctccgcgtttcgagcgtccgtcgcgcgac
tcgggcaatgacgagcgccgcggcccgcgtccgccgcggtcgaacgatgaaggcttcacg
ccgcgcccgccacgcccgcacggatccgatgccacctcgcgtccgcagcgcacgcacgat
tccgacttcgccgcgcgcccggctcgcgcgcccgattccgaattcggcgcgcgcccgccg
cgcgcggccaagccgccgcgttcggcgcccgataccggcatggaaacctaccgggtcgag
gtcggccacgcgcacggggtcaagccggggaacatcgtgggcgcgatcgccaacgaggcc
gggctggagagccgcttcatcggccgcatcgacatccacgacgaccattcgatcctggac
ctgcccgagggcatgccgccggaaatcatgtcgcacctgcagaaggcctgggtggtcggc
cagcagctgcggatcacccgctgggacggcagccacgctcccgcagcgcaggcgccgaag
agcttccggccgcagggcgcccgtccgggcaagcccggcaatgggccgccgcgtccgcac
cgcaagggtccgcccaagccgcacggcggctga
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