Paracoccus denitrificans: Pden_1743
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Entry
Pden_1743 CDS
T00440
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pde
Paracoccus denitrificans
Pathway
pde03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pde00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Pden_1743
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pde03019
]
Pden_1743
Enzymes [BR:
pde01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Pden_1743
Messenger RNA biogenesis [BR:
pde03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Pden_1743
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
DEDD_Tnp_IS110
CMS1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ABL69840
UniProt:
A1B2U6
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All DBs
Position
1:1731341..1732780
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AA seq
479 aa
AA seq
DB search
MRADTRATWPKDVMTNETTRPNRSGNPRAQQGGKPRFRSDKPNTNHRRHRAEPEEKFIRR
AIPEIDTAFTRMGIDARVAINLPGLGIETPSPIQEKSIPGIVAGRDLLGLAQTGTGKTAA
FGLPMLTRLLNIGRKPEPRTCRALILAPTRELATQIAENIDNYAIGTPIRQFRVVGGASI
NVQVQRLERGVDVLIATPGRLIDLIERGAIDLSQTRYLVLDEADQMLDIGFIHALRRIAK
MLPRERQTLLFSATMPKLMEELADSYLNDPLRVAVNPPGQAAEKIDQGVHFVNQGDKATL
LAEYLSKHVDELAIVFGRTKHGSEKLCKLLDKWGFKVAAIHGNKSQGQRERALASFRAGE
TKVLVATDVAARGLDIPQVAHVYNYDLPNVPENYVHRIGRTARAGRDGRAIAFCSPTEIG
ELRAIEKAMKAKIAVVGGEEPFEAAKIRERGGPAGRPAQGARKRPARRPSRAPKTAQRA
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atgcgcgccgatacgcgggcgacctggccgaaagacgttatgaccaacgaaaccacccgc
ccgaaccgttcgggcaatccccgcgcccagcaaggcggcaagccgcgtttccgcagcgac
aagcccaacaccaaccaccgccgtcaccgcgccgagccggaggagaaattcatccgccgc
gccatccccgagatcgacaccgccttcacccgcatggggatcgatgcgcgcgtggcgatc
aacctgcccggcctggggatcgagaccccctcgcccatccaggagaaatccatccccggc
atcgtcgccggccgcgaccttctgggccttgcccagaccggcaccggcaagacggcggcc
ttcggcctgccgatgctgacccggcttctgaacatcggccgcaaacccgagcccaggacc
tgccgggcgctgatcctggcgccgacccgcgagcttgcgacccagatcgccgagaatatc
gacaattacgccatcggcacgccgatccggcagttccgcgtcgtcggcggcgcctcgatc
aacgtgcaggtccagcggctggagcgcggcgtcgacgtgctgatcgcgacgccgggccgg
ctgatcgacctgatcgagcgcggcgccatcgacctgtcgcagaccaggtatctggtgctg
gacgaggccgaccagatgctggacatcggcttcatccacgcgctgcgccgcatcgccaag
atgctgccgcgcgaacgccagacgctgctgttctcggccaccatgccgaagctgatggag
gaactggccgacagctatctgaacgatcccttgcgcgtggcggtgaacccgcccggccag
gcggcggaaaagatcgaccagggcgtgcatttcgtcaaccagggcgacaaggcgacgctg
ctggccgaatacctgtccaagcatgtggacgagttggccatcgtcttcggccgcaccaag
cacggctcggaaaagctgtgcaagcttctggacaaatggggcttcaaggttgccgccatc
cacggcaacaagtcgcagggccagcgcgagcgggccttggccagcttccgcgccggcgag
accaaggtgctggtcgcgaccgacgtggcggcgcgcggcctcgacattccgcaggtggcg
catgtctacaactacgacctgccgaacgtgccggaaaactatgtccaccgcatcggccgc
accgcgcgcgccgggcgcgacgggcgtgccatcgcattctgctcgcccaccgagatcgga
gagctgcgcgccatcgaaaaggcgatgaaggccaagatcgccgtggtcggcggcgaggag
cccttcgaggcggccaagatccgcgagcgcggcggtcccgccggccgcccggcccaaggc
gcacgcaagcgcccggcccggcgcccctcgcgcgcaccgaaaacggcgcagcgggcctga
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