Paracoccus denitrificans: Pden_3558
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Entry
Pden_3558 CDS
T00440
Name
(GenBank) polysaccharide biosynthesis protein CapD
KO
K15894
UDP-N-acetylglucosamine 4,6-dehydratase/5-epimerase [EC:
4.2.1.115
5.1.3.-]
Organism
pde
Paracoccus denitrificans
Pathway
pde00520
Amino sugar and nucleotide sugar metabolism
pde00541
O-Antigen nucleotide sugar biosynthesis
pde01100
Metabolic pathways
pde01250
Biosynthesis of nucleotide sugars
Brite
KEGG Orthology (KO) [BR:
pde00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00520 Amino sugar and nucleotide sugar metabolism
Pden_3558
09107 Glycan biosynthesis and metabolism
00541 O-Antigen nucleotide sugar biosynthesis
Pden_3558
Enzymes [BR:
pde01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.115 UDP-N-acetylglucosamine 4,6-dehydratase (configuration-inverting)
Pden_3558
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Gene cluster
GFIT
Motif
Pfam:
Polysacc_synt_2
Epimerase
3Beta_HSD
GDP_Man_Dehyd
RmlD_sub_bind
NAD_binding_4
NAD_binding_10
adh_short
KR
NmrA
NolX
Shikimate_DH
Motif
Other DBs
NCBI-ProteinID:
ABL71628
UniProt:
A1AY66
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Position
2:complement(709730..710731)
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AA seq
333 aa
AA seq
DB search
MFDNKSILITGGTGSFGKKYVQTLLSRFKPRKIIVFSRDELKQFEMQQKFNDPCIRYFIG
DVRDRERVLQATRGVDYIIHAAALKQVPAAEYNPVECIKTNIDGAQNVIHGAITNNVEKV
IALSTDKAANPINLYGATKLASDKLFVAANNMVGERRTRFAVVRYGNVVGSRGSVVPFFQ
GLIDQGAKSLPITDTDMTRFWISLQQGVDFVLKNFTRMHGGEIFVPKIPSVRIVDLARAM
APGLEQHVIGIRPGEKLHEIMCPADDSHLAVEYDDHFVLSPSIRFYDHDVDYFSNGIGES
GKAVGRGFEYNSGTNTHFLSVDEIVEFNAKAMA
NT seq
1002 nt
NT seq
+upstream
nt +downstream
nt
atgttcgacaataaatccatcctgattacaggcgggaccggcagctttggcaagaagtat
gtccagacgctgctgtcgcggttcaagccccgaaagatcattgtcttctcgcgcgacgaa
ctgaagcagttcgagatgcagcagaagttcaacgatccctgcatccgctacttcatcggc
gacgtgcgcgaccgcgagcgggtgctgcaggcgacgcgcggggtggattacatcatccat
gccgctgcattgaaacaggtgccggcggcggaatacaaccccgtcgaatgcatcaagacc
aatatcgacggggcgcaaaacgtcatccatggcgccatcaccaacaatgtcgagaaggtg
atcgcgctttcgaccgacaaggcggcgaacccgatcaacctctatggcgcgaccaagctt
gcctcggacaagctcttcgtcgccgcgaacaacatggtgggcgaacgccggacccgtttc
gccgtggtgcgctacggcaatgtcgtgggctcgcgcggttcggtcgtgccgttcttccag
gggctgatcgaccagggcgcgaaaagcctgccgatcaccgataccgacatgacccgcttc
tggatctcgctccagcaaggggtggatttcgtgctgaagaacttcacccgcatgcatggc
ggcgagatcttcgtgccgaagatcccctcggtgcgcatcgtcgacctggcccgcgccatg
gcgccggggcttgaacagcatgtgatcggcatccgccccggcgaaaagctgcacgaaatc
atgtgcccggccgatgacagccacctggccgtcgaatacgatgaccatttcgtgctctcg
ccctcgatccgcttctacgatcacgacgtggactatttctcgaacggcatcggcgagtcc
ggcaaggccgtggggcgtggcttcgaatacaattcgggcaccaacacccacttcctgagc
gtggacgagatcgtggagttcaacgcgaaggccatggcatga
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