Paracoccus denitrificans: Pden_4186
Help
Entry
Pden_4186 CDS
T00440
Name
(GenBank) conserved hypothetical protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pde
Paracoccus denitrificans
Brite
KEGG Orthology (KO) [BR:
pde00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Pden_4186
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pde03400
]
Pden_4186
Enzymes [BR:
pde01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Pden_4186
DNA repair and recombination proteins [BR:
pde03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Pden_4186
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ABL72250
UniProt:
A1B9Q6
LinkDB
All DBs
Position
2:1341593..1342585
Genome browser
AA seq
330 aa
AA seq
DB search
MRIGWPAANRDPAAGVGPESSKEPTMTERIEGVTISHPERVIFADAGPGKAGLTKAGLTK
ARLARYYQQIAPLMLEEAANRPLSLLRLPDGMAGERFFQKHPGKGFPKAIRQMQITESDG
EAAPYAYVTDAAGLVAAVQMGTVEFHIWPARRDRLERPDRLVLDLDPDEGLGFDAVRSAA
LSLRGRLLDLGLEPWAMLTGGKGVHLVVPLRRSLGWDDLKRFARGFAALCAQEEPDRYTV
ELAKASRRGRIFIDWLRNERGSTAVAPFSVRARPGAPVAAPIGWDELARISTARAFGIAA
AQERGWAGVTRVQQSLTRPMFEAVEKALAG
NT seq
993 nt
NT seq
+upstream
nt +downstream
nt
atgcggatcggatggccggcggcgaaccgcgaccccgccgccggcgttggtcccgaaagc
agcaaggagccgaccatgaccgagcggatcgagggtgtgaccatctcgcatcccgagcgg
gtgatctttgccgatgccgggccgggcaaggcggggctgaccaaggcggggctgaccaag
gcgaggctggcgcgttactaccagcagatcgcgcccctgatgctggaagaggccgcgaac
cgcccgctgtcgcttctgcgcctgcccgacgggatggcgggcgagcggttctttcagaag
catcccggcaagggctttcccaaggcgatccggcagatgcagatcaccgaaagcgacggc
gaagccgcgccctatgcctatgtcaccgatgccgcggggctggtcgccgccgtgcagatg
ggcacggtcgagttccatatctggcccgcccgccgcgaccggctggagcggcccgaccgg
ctggtcctggacctcgaccccgatgaggggctgggcttcgatgcggtgcgcagcgccgcc
ctgtcgctgcgcggccggctgctggacctggggcttgagccctgggcgatgctgaccggc
ggcaagggcgtgcatctggtggtcccgctgcgccgcagcctcggctgggacgatctcaag
cgtttcgcccgcggctttgccgcgctttgcgcgcaagaggaaccggatcgctatacggtg
gaactggccaaggccagccgcaggggccggatcttcatcgactggctgcgcaacgagcgc
ggctcgacggcggtcgcgcccttttcggtgcgcgcccggcccggcgcgccggtggcggcc
ccgatcggctgggacgaactggcccggatcagcaccgcccgcgccttcggcatcgctgcg
gcgcaagagcgcggctgggccggcgtgacgcgggtgcaacaaagcctgacccggcccatg
ttcgaggcggtggagaaggcgctggccggttga
DBGET
integrated database retrieval system
