Pseudarthrobacter defluvii: JCQ34_01790
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Entry
JCQ34_01790 CDS
T09165
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pdel
Pseudarthrobacter defluvii
Pathway
pdel03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pdel00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
JCQ34_01790
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pdel03400
]
JCQ34_01790
Enzymes [BR:
pdel01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
JCQ34_01790
DNA repair and recombination proteins [BR:
pdel03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
JCQ34_01790
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
LigD_N
DNA_ligase_A_C
DNA_primase_S
DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID:
WJH24876
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Position
complement(366422..369007)
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AA seq
861 aa
AA seq
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MAGSRERVRVAGRELTLTNLDKIIYPETGTTKADVLAYYAAVAHVLVPAAANRPATRKRW
VNGVGTADKPGEVFFQKELEDSAPGWLPRAAITHKDRTIHYPLVNDAATLTWFGQINSLE
IHVPQWRVDSHGNQLNPDRLVLDLDPGDGAGLQECREVALLARAILQDVGLNPVPVTSGS
KGIHLYAALDGTQTSEQISAFARELARALEADHPDLAVSDMKKSLRKGKVLVDWSQNNAA
KTTIVPYSLRGRPTPLVAAPRTWREIDSPNLKHLDYQEVLRRVRDGKDPFAAVVSAAGGG
APTAADDHEEANDADPRLGKYRAMRDPNATPEPFAGLPAGGNSFVIQEHHASRLHWDLRL
EHEGVLASWALPKGVPESGGKNHLAVQTEDHPMDYLTFHGTIPKGEYGAGVMTIWDTGTY
ELHKWINGREVIVTLTGAEDGGLGGTKKIALIHTGRGPGKDAQGQWLIHLMDQEQPGGRR
RLAAPAGQVQSASAAPAEEPAGEPDEEPDEEPDDPEEDDGGAAPEQEATPQVPAEPATGT
VADPLEYQPMIATSGTTVDLQGSSWQYELKWDGVRAILVADRERVRIFSRNGNDVSRTYP
EFTDRGCWPEQPFVADGEIIAVRPGGRPDFGLLQGRMKLTRAADVAKARTTIPVQLMLFD
LLFDDGRDLRRLSLSKRRQRLEEFFEPSDCPVDLSMVLAESVELLMASAQELGLEGIMAK
RTDSRYVSGQRTRTWIKLKTEQTQEVVVGGWRPGKGGRQETVGSLLVGIPDGDKLQYVGR
VGSGFSSRELTELRQTVERLGRKSSPFHEVPRPDSADAHWVAPELVGEVTYSEWTGPGRL
RHPRWRGWRVDKDPADVVREG
NT seq
2586 nt
NT seq
+upstream
nt +downstream
nt
gtggccggtagcagggagcgtgtccgggtggcggggcgggaactgaccctcaccaacctg
gacaaaatcatctatccggagaccggcaccaccaaggcggacgtgctggcctactacgcc
gcggttgcccacgtcctggttcctgcggcagccaaccgcccggccacccgcaagcggtgg
gttaacggagtgggcacggcggacaagcccggggaagtgtttttccaaaaggagctggag
gattcggccccgggatggctgcctcgggcggcgatcacgcacaaggaccgcaccatccac
taccccctggtcaacgatgccgcaaccctgacctggttcggccagatcaactcgctggag
atccacgtgccgcagtggcgggtggactcgcacggcaaccaactgaatccggaccggctg
gtgctggacctggacccgggcgacggagccggcctgcaggagtgccgcgaggtggccctc
ctggcccgcgccatcctgcaggacgtgggcctgaacccggtgccggtgaccagcggcagc
aagggcatccacctctacgccgcactggacgggacccagacctccgaacagatttccgcg
ttcgcccgggaactggcgcgcgcactcgaggccgaccacccggacctcgcagtcagcgac
atgaagaagtcgctgcgcaaaggcaaggtactggtggactggagccagaacaacgcggcg
aaaaccaccatcgtcccctactcgttgcgtggccggcccacccccctggtggctgcaccg
cggacgtggcgggagatcgactcgcccaacctgaagcacctcgactaccaggaggtgctg
cggagggtgcgggacgggaaggacccgtttgccgccgtcgtcagcgccgcaggtggcggg
gcaccaaccgcggcggacgaccacgaggaagcgaacgacgccgatccccgcctgggcaag
taccgcgccatgcgcgatcccaacgccacgcccgagccgttcgccggcctccccgcaggc
ggcaacagctttgtcatccaggagcaccacgccagccggctgcattgggacctccggctg
gaacacgagggcgtcctggcatcctgggcacttcccaagggcgttccggagtccggcggc
aagaaccacctggctgtccagaccgaggaccaccccatggactacctcaccttccacggg
accatccccaagggcgagtatggcgcgggcgtcatgaccatttgggacaccggcacctat
gaactgcacaagtggatcaacggccgggaggtcatcgtcacgctgaccggcgccgaggac
ggcgggctgggcggcaccaagaagattgcgctgatccacaccggaaggggcccaggcaag
gacgcccaagggcagtggctcatccacctgatggaccaggagcagccaggcggacgacgg
cggcttgcggctccggcgggacaggttcaatccgcttcagcggcaccggctgaggagccg
gccggggagccggacgaggagccggacgaggaaccggacgatcccgaagaggacgacggc
ggtgcggcgccggagcaggaagccacgcctcaagtgccggcagagcctgccaccggcacc
gttgcggacccgctggaataccagcccatgatagccacgtccggcaccacggttgacctg
cagggcagctcgtggcaatacgaactcaaatgggacggcgtccgggccatcctggtggcc
gacagggaaagggtgcgcatcttctcgcgcaacggcaacgatgtcagccgcacctacccc
gagttcacggaccggggctgctggccggagcagcccttcgtggcggacggtgagatcatc
gccgtccggcccggcggacggcctgactttggcctcctgcagggccgtatgaagctcacc
cgggccgccgacgtcgccaaagcccgcaccaccatcccggtccagctgatgctgttcgac
ctcctgttcgacgacgggagggacctccggcgcctgtcgctcagcaaacggcggcaacgg
ctcgaggagtttttcgagccgtccgactgccctgtggacctgtccatggtgctggcggag
tccgttgaactcctcatggccagcgcgcaggagcttgggcttgaaggcatcatggccaag
cggaccgacagccgctacgtcagcggccagcggacccggacatggatcaaactcaagacg
gaacagacccaggaagtggtggtgggcggctggcgtccgggcaagggcggccgccaggag
accgttggatcactgctggtggggattcccgacggcgacaagctgcagtacgtgggccgc
gtcggctccggcttcagcagccgtgaactcacggagctgcggcaaacggtggagcggctg
ggccggaaaagctcgccgttccacgaggtcccccgccccgattctgccgacgcacactgg
gtggcaccggaactggtgggcgaagtaacgtacagcgaatggaccgggccgggcaggctc
cggcacccacggtggcggggctggcgcgtggacaaggacccggcggacgttgtccgggaa
ggctga
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