Pseudarthrobacter defluvii: JCQ34_06075
Help
Entry
JCQ34_06075 CDS
T09165
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pdel
Pseudarthrobacter defluvii
Pathway
pdel03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pdel00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
JCQ34_06075 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pdel03400
]
JCQ34_06075 (mfd)
Enzymes [BR:
pdel01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JCQ34_06075 (mfd)
DNA repair and recombination proteins [BR:
pdel03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
JCQ34_06075 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
RecG_dom3_C
DUF3638
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
WJH25634
LinkDB
All DBs
Position
1305271..1308951
Genome browser
AA seq
1226 aa
AA seq
DB search
MSLPGQSAAGTSSTGTSSTTPSLDGLRRALEPDTTFARVGAEAARGFAVRGQDYQISAPA
GLRPVLLAEMADGLAAAAEGAEPGVVLAVTATGREAEDLSAALRAYLPADAVAEFPSWET
LPHERLSPRSDTVGRRLSVLRRLAHPESSTAGRLRVVVAPVRAVVQPVVAGLGDLVPVTL
KVGQDVPFTNVVKSLADAAYARVDMVTHRGEFAVRGGIIDVFPPTEDHPIRVEFFGDEVD
QMRWFAVADQRSLSAPGVHHPTELHAPPCREILITPSVMSRAATLKSQLPAAADMLEKIA
GGIAVEGMESLAPVLVDAMVPFVDQLPADSIAVVIEPEKVRTRAHDLAATNEEFLEAAWS
TASDGGAAPLDLSSQASAALHSASFRSLAETRSSSLAHGVSWWSITSLAQDAELLPEIDV
LNLHAREPRGYQGDVAEMMDFIGSHVRDQWRIVVATEGPGPAQRLAELFHENDIPCARVD
SLDHEPQPGIIEVTTAAVGRGFVLDGLKLGLLTEADLLGRTSAGSTKDMRRMPSKRRNAV
DPLQLVAGDHVVHEQHGIGRFVELIQRKVAGGGDGVREYLVLEYAPAKRGAPGDRLFVPT
DQLDQVTRYVGGDTPVLSKMGGADWASTKSKARKAVKEIAGELIRLYSARMASRGHAFGP
DTPWQRELEEAFPYVETPDQLTTINEVKADMEREIPMDRLVSGDVGYGKTEIAVRAAFKA
VQDGKQVAVLVPTTLLAQQHYETFTERFSGFPLRVKPLSRFQSAKESKETAEGVKSGAVD
IVIGTHRLLSKDFEFKDLGLVIVDEEQRFGVEHKEALKKMRTNVDVLAMSATPIPRTLEM
SLTGIRETSTLATPPEERHPVLTYVGPYTDKQTSAAIRRELMREGQVFLVHNRVSTIERT
AAKIRELVPEARVEVAHGKMSESRLEQIIVDFWERRFDVLVCTTIIETGLDISNANTLIV
DGADKYGLSQLHQLRGRVGRGRERAYAYFLYPSEKPLGEVALERLKAVAAHNELGAGMQL
AMKDLEIRGAGNLLGGEQSGHIQGVGFDLYIRLVGEAVADFRGEAEEKAAEMKIELPVNA
HLPHDYVPGERLRLEAYRKLAAALTNEAIDEVQAELVDRYGELPLPAQNLVAVAQFRVAA
REAGLSDVALQGNFIKFSPATLPESKTMRLNRMYPGSQTKPALDAVLIPKPKTARIGGRD
LQDAEILEWANGVIRNIFSDAPLAVS
NT seq
3681 nt
NT seq
+upstream
nt +downstream
nt
atgagtcttcccggccagtccgccgccggcacatccagcacgggcacctccagcaccacc
ccttcgctggatggactgcgccgcgcgctcgagccggacacgaccttcgcccgcgtgggc
gccgaggccgcccggggctttgccgtccgcggccaggattaccagatcagcgccccggcc
ggcctgcgcccggtgctgctggcggagatggcggacgggcttgccgctgccgccgagggc
gcagaaccgggcgtggtgcttgctgtgacggccaccggccgcgaggccgaagacctgtca
gccgccctgcgcgcctaccttccggcggacgcggtggccgagttccccagctgggagacc
ctcccgcacgagcggctttcgccccgctcggacaccgtgggccgccggctctccgtgctg
cgccggctggcacatccggaaagttcgacggcgggccggctgcgcgtcgtcgtcgctccc
gtccgcgccgtggtccagcccgtggtggccgggctgggcgaccttgttccggttacgctg
aaggtgggccaggacgttccgttcaccaacgtggtgaagagcctcgccgacgccgcatac
gcccgggtggacatggtgacgcaccggggcgagtttgccgtccgcggcggcatcatcgac
gtcttcccgcccacggaggaccaccccatccgcgtcgagttcttcggcgacgaggtggac
cagatgcgctggttcgccgtcgccgaccagcgctcgctgtccgcgcccggcgtgcaccac
cccacggagctgcacgcaccgccctgccgcgaaatcctcatcactccttccgtgatgtcc
cgcgccgccacgctcaagtcccagcttccggccgcggcggacatgctcgaaaagatcgcc
ggcggcatcgccgttgaaggcatggagtccctggcgccggtgctggtggatgccatggtg
ccgttcgtggaccagctgccggccgattccattgccgtggtgatcgaaccggaaaaggtg
cgcacccgggcccatgacctcgctgccaccaacgaggagttccttgaggcggcgtggtcc
accgcgtccgacggcggggcggcacctttggacctcagctcccaggccagtgcggcgctt
cattcggccagcttccgctcgctggctgaaacccggtcctcgtccctggcgcacggggtg
tcctggtggtccatcacctcgctggcgcaggatgcggaactgctgcccgagatcgacgtg
ctgaacctgcacgccagggagccccgcggctaccagggcgatgtcgccgagatgatggac
ttcatcggctcgcacgtgcgcgaccagtggcggatcgtggtggccaccgagggccccggc
ccggcccagcgcctggcggagctgttccacgaaaacgacattccctgcgcccgggtggac
agcctggaccacgaaccccagccgggcatcatcgaggtgaccaccgccgccgtcggccgc
ggcttcgtcctggacgggctcaaactgggcctgctcaccgaagccgacctgctgggccgc
acctccgccgggtccaccaaggacatgcggcggatgccctccaaacggcgcaacgccgtc
gaccccctccagttggtggcgggggaccatgtggtgcacgaacagcacggcatcggccgg
ttcgtggaactcatccagcgcaaggtggccggcggcggcgacggcgtgcgcgagtacctg
gtgctggaatacgcgccggccaagcgcggcgcccccggcgaccggctgttcgtccccacg
gaccaactggaccaggtgacccgctacgtgggcggggacaccccggtcctgagcaagatg
ggcggcgcggactgggccagcaccaagtccaaggcgcgcaaggccgtcaaggagatcgcc
ggtgaactgatccggctgtactcggcccgcatggcttcccgcggccacgcctttggcccc
gacactccatggcagcgcgaactggaggaggcgttcccgtacgtggagacgccggaccag
ctgaccaccattaacgaggtcaaagcggacatggagcgggaaatccccatggaccggctg
gtatccggcgacgtgggctacgggaagaccgagatcgcggtgcgggctgcgttcaaggcc
gtccaggacggcaagcaggtggcggtgctggtgcccaccacgctgctggcgcagcagcac
tacgaaaccttcaccgaacggttctccggcttcccccttcgcgtgaagccgctatcccgc
ttccagtccgcaaaggagtccaaggaaaccgccgaaggggtcaagagcggcgccgtggac
atcgtgatcggcacccaccggctgctgtccaaggacttcgagttcaaggacctcggcttg
gtgatcgtggacgaagagcagcggttcggcgtggagcacaaggaggcgctgaagaagatg
cgcaccaacgtggacgtcctggccatgagcgccaccccgattccccgcaccctggagatg
tccctgaccggcatccgggaaacctcgacgctcgccaccccgccggaggaacggcacccg
gtgctgacctacgtgggcccgtacactgacaagcagacctccgccgccatccgccgcgaa
ctcatgcgcgaagggcaggtgttcctggtccacaaccgggtgtccaccattgagcggacc
gcggcgaagatccgcgaattggtcccggaagcccgggtggaggtggcgcacggcaagatg
tccgagagccgcctggagcagatcatcgtggacttctgggagcggcgcttcgacgtcctg
gtgtgcaccaccatcattgagaccggcctggacatctccaacgccaacacgctgatcgtg
gacggtgcggataaatacggcctgtcccagctgcaccagctccgcggccgtgtgggccgt
ggccgggaacgtgcgtatgcgtacttcctgtacccgtcggaaaagccgttgggtgaagtg
gcactggaacggctcaaagccgttgcggcgcacaacgaactgggcgccggcatgcagctg
gccatgaaggacctggagatccgtggcgccggcaacctgctgggcggtgaacagtccggc
cacatccagggggtgggcttcgacctgtacatccggcttgtgggcgaggccgtggcggat
ttccgcggcgaggccgaggagaaggctgcggagatgaagatcgagctgccggtcaacgcg
cacctgccgcacgactacgttcccggcgagcggctgcgcctggaggcctaccggaagctc
gcggcggccctcaccaacgaggccatcgacgaggtccaggcagaactggtggaccgctac
ggcgaacttccgctgccggcacagaacctggtggccgtggcacagttccgggtggccgcc
cgcgaagccggcctgtccgacgttgcgctccagggcaacttcatcaagttctccccggcc
acgctgccggagtccaagaccatgcgcctgaaccggatgtacccgggttcgcagaccaag
cctgcgctggacgcggtgctcattcccaagcccaagacggcgcggatcgggggccgggac
ctgcaggacgccgaaatcctggagtgggccaacggcgtcattcggaacatcttctccgac
gccccactggcggtgagttag
DBGET
integrated database retrieval system
