Paenibacillus donghaensis: B9T62_38390
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Entry
B9T62_38390 CDS
T04971
Name
(GenBank) DNA polymerase domain-containing protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pdh
Paenibacillus donghaensis
Pathway
pdh03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pdh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
B9T62_38390
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pdh03400
]
B9T62_38390
Enzymes [BR:
pdh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
B9T62_38390
DNA repair and recombination proteins [BR:
pdh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
B9T62_38390
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
Dis3l2_C_term
Motif
Other DBs
NCBI-ProteinID:
ASA26070
UniProt:
A0A2Z2KQH5
LinkDB
All DBs
Position
complement(8494062..8494946)
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AA seq
294 aa
AA seq
DB search
MPATIKGSITVDGHEIAVTNPEKLLWPECGITKRIYLQKLAALSPYLLPYCRDRLLTVIR
YPHGVGGMSFYQKNAPEPLPPFVRTASQDNITYILLQELPELLWLGNLAALEFHPSLHYA
GSSLPCEWMIDLDPSMDVEPRIMEAAAIVGGVLKSLGLQSVPKTSGATGVQIIVPVSPGV
TFEGLRRIGHFVGRFVAEKHPGLFTLERLKKNRGDKIYFDYLQHYGGKTLAAPYTPRARP
LATVSTPLLWEEVERNVSPLDFHLLNIEERLRSVGELIGKLPPQPVEDVIARLP
NT seq
885 nt
NT seq
+upstream
nt +downstream
nt
atgccggcaacgatcaaaggttcaatcaccgtggacggccatgaaattgctgtaaccaat
cccgagaagctgctctggccggagtgcggaattaccaaacggatctatctgcagaagctg
gccgcgctctctccttatctgttgccctattgccgggaccggctgctgacagtgatccgc
tatcctcacggggtgggggggatgtcgttctatcagaagaatgcgccagagccgctccct
ccattcgtgcggaccgccagtcaggacaatattacctatatcctgctgcaggagctgccg
gagctgctctggttgggcaacctggccgcgctggagttccatccctccctgcattatgcc
ggcagcagtctgccttgcgaatggatgattgacctggacccctccatggacgtggagccg
cggattatggaggctgccgccatcgttggcggggtcctgaaatcgcttggcctccagtcc
gttcccaagacctcgggcgcaacgggcgtccagatcatcgttcccgtcagccccggagtc
accttcgaggggctgcgccggatcggccatttcgtcggccggttcgtggcagagaaacat
cccggcctgttcaccctggagcggctcaaaaaaaaccgcggcgacaaaatctatttcgat
tatctgcagcattacggaggcaaaaccctggccgcgccgtatactccccgcgcccggccg
ctggccacggtctccacaccgctgctgtgggaggaagtggagcggaatgtctccccgctg
gatttccacctgctgaacatcgaagaacggctgcgttcggtgggcgagctgatcgggaag
ctgcctccccagcctgtagaggatgtcattgcccgcttgccatag
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