KEGG   Parabacteroides distasonis: BDI_1680
Entry
BDI_1680          CDS       T00549                                 
Name
(GenBank) RNA polymerase ECF-type sigma factor
  KO
K23514  RNA polymerase sigma-19 factor, ECF subfamily
Organism
pdi  Parabacteroides distasonis
Pathway
pdi02020  Two-component system
Brite
KEGG Orthology (KO) [BR:pdi00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    BDI_1680
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pdi03021]
    BDI_1680
Transcription machinery [BR:pdi03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     BDI_1680
SSDB
Motif
Pfam: Sigma70_r4_2 Sigma70_r2 Sigma70_r4 Sigma70_ECF GerE HTH_5 HTH_40 IF3_C HTH_11 Hemocyanin_N HTH_38 HTH_Mga HTH_24 HTH_23 HTH_28 HTH_Tnp_ISL3 HTH_36 HTH_10
Other DBs
NCBI-ProteinID: ABR43432
UniProt: A6LCL8
LinkDB
Position
complement(1989469..1990011)
AA seq 180 aa
MEERQIIKSLKEGDREAFSMLYKQYWEKVYHFCGLYLNNRDVAEDVVQEVFIKVWESREF
IREDDNFKGLLFIITRNLIFNHHRKNVNEDFYKMTVLSAMDTSYDLEEEITAYNLGEYID
HLIEELPERRRVIFNLSRKEHKSYKEIAFQLNISEKTVENQISEALKFLKKNIMLLIWFI
NT seq 543 nt   +upstreamnt  +downstreamnt
atggaagagagacaaattataaagtcgttgaaagaaggagatagggaggctttttcgatg
ttgtataaacaatattgggaaaaggtttatcatttctgcgggctttatttgaataatcgg
gatgtagccgaggatgtggtacaagaggtgtttatcaaggtctgggagtcgagggaattc
atccgggaggatgataacttcaagggtcttctgtttatcatcacccgtaacttgatcttt
aatcatcaccggaagaacgtgaacgaggacttttataaaatgacggtcttgtccgctatg
gatacctcctacgacttagaggaagagatcaccgcctataacttgggggagtatatcgat
catttgatagaggaattgccggaaagacgccgggttatctttaatctaagccggaaggag
cataaaagctataaagagatagccttccaactcaatatttccgagaagaccgttgagaac
cagatcagcgaagccttgaagttcttgaagaaaaatatcatgttacttatctggtttatc
tag

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