Phyllostomus discolor (pale spear-nosed bat): 114503146
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Entry
114503146 CDS
T07739
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X2
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
pdic
Phyllostomus discolor (pale spear-nosed bat)
Pathway
pdic03013
Nucleocytoplasmic transport
pdic03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pdic00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
114503146 (UPF1)
03015 mRNA surveillance pathway
114503146 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdic03019
]
114503146 (UPF1)
Enzymes [BR:
pdic01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
114503146 (UPF1)
5.6.2.5 RNA 5'-3' helicase
114503146 (UPF1)
Messenger RNA biogenesis [BR:
pdic03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
114503146 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
114503146 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
114503146
NCBI-ProteinID:
XP_028376369
EnsemblRapid:
ENSPDIG00005014109
UniProt:
A0A6J2MAU0
LinkDB
All DBs
Position
8:49034840..49069190
Genome browser
AA seq
1119 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGGPGGPGGGGPG
VPVGAGAGAAAGQLDAQVGGPEGILQNGAVDDSVAKTSQLLAELNFEEDEEDTYYTKDLP
VHACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGET
VLECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFL
SWLVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDA
YQYQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQG
DEICLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTS
FDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAV
KTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGL
KVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALK
RTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLIL
VGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEG
SLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTK
LLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIIL
SCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLV
EGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSSQGRPSNMY
FQTHDQLGMISAGPSHVAAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGTPKGKTGRGG
RQKNRFGLPGPSQTNLPSSQASQDVASQPFSQGALTQGYISMSQPSQMSQPGLSQPELSQ
DSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3360 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacgggcccagctcgcagacgctcaccttcctggacactgaggag
gccgagcttctcggcgccgacacgcagggctccgagttcgagttcaccgacttcactcta
cccagccagacgcagacgcctcccggaggccctggtggccccggaggtggcggcccgggg
gtcccggtcggcgcgggtgcgggcgctgcggccggacagctcgatgcccaggttggagga
cctgagggcatcctgcagaatggggccgtggatgacagcgtggccaagactagccagttg
ctggccgagttgaacttcgaagaggatgaagaggatacctattacacaaaggacctaccg
gtacatgcctgcagttactgcggaatacatgatcctgcttgcgtggtttactgtaatacc
agcaagaagtggttctgtaacgggcgtggaaatacttctggcagccacattgtaaatcac
cttgtgagggcaaaatgcaaagaggtgactctgcacaaggatggtccccttggggagacg
gtcctggagtgttacaactgtggctgccgcaacgtcttcctcctcggcttcatccccgcc
aaggccgactcggtggtggtgctgttgtgcaggcagccctgtgccagtcagagcagcctc
aaggacatcaactgggacagctcgcagtggcagcccctgatccaggatcgctgcttcctg
tcctggctggtcaagatcccttcagagcaggagcagctgcgggcccggcagattactgcc
cagcagatcaacaagcttgaggagctgtggaaggagaatccttctgctaccttggaggat
ctggagaagccgggggttgatgaggaaccgcagcatgtcctcctgcggtatgaggatgcc
taccagtaccagaacatattcgggcctctggtcaagctggaggctgactatgacaagaag
ctgaaagagtcacagactcaagataacatcacggtcaggtgggacctgggccttaacaag
aagagaatcgcctacttcactttacccaagactgactctgacatgcggctcatgcagggg
gatgagatatgcctgcggtataaaggggatctggctcccctgtggaaagggatcggccac
gtcatcaaggtccctgataattatggtgatgagattgccattgagctgcggagcagtgtg
ggtgcacctgtggaggtgacgcataacttccaggtggattttgtgtggaaatccacctca
tttgataggatgcagagtgcgctgaagacctttgctgtggatgagacctcggtgtcaggc
tatatctaccacaaactgctcggccacgaggtggaggatgtgatcatcaagtgccagctg
cccaagcgcttcacagcacaggggctgcctgacctcaaccactctcaggtttatgccgtg
aagactgtgctgcagagaccattgagcctgatccagggaccaccaggaacagggaagact
gtgacctcagccaccattgtctaccacctggcacggcagggcaacgggcctgtgctcgtc
tgtgctccaagtaacatagctgtggatcagctgactgagaagatccaccagacaggactg
aaagtcgttcggctctgtgctaagagccgtgaggccatcgattcccccgtgtcattcctg
gccctgcacaaccagatcaggaacatggatagcatgccagagctccagaagctgcagcag
ctgaaggacgagactggggagctgtcatctgctgatgagaagcgataccgagccctgaag
cgcacagctgaaagggagctgctcatgaacgcagatgtcatctgctgcacgtgtgtgggt
gcaggagaccccaggctcgccaagatgcaattccgctccattctaatcgacgagagcacc
caggccacagagccagagtgcatggtccctgtggtccttggagccaagcagctgatcctc
gtgggcgaccactgccagctgggccctgtggtgatgtgcaagaaggcagccaaggcaggg
ctgtctcagtcgctgtttgaacgcctggtggtgctgggcattcgtccaatccgcctgcaa
gtccaatatcggatgcaccctgcactcagtgccttcccatccaacatcttctatgaggga
tctctgcagaacggtgtcactgcagcggatcgagtgaagaaggggtttgacttccagtgg
ccccaacctgataagccaatgttcttctatgtgacccagggccaggaagagatagccagc
tcgggtacctcctacctgaacaggacggaggctgcaaatgtggagaagatcaccacgaag
ctgctgaaggcaggcgccaaaccggaccagattggtatcatcacaccttatgagggccag
cggtcctacctggtgcagtacatgcagttcagtggctccctgcacaccaagctataccag
gaggtggaaattgccagcgtggatgctttccaggggcgtgagaaggacttcatcatcctc
tcctgtgtgagagccaacgagcaccaaggcatcgggtttttaaacgaccccaggcggctt
aacgtggccttgacccgagcgagatatggagtcatcattgtaggcaaccccaaggctctg
tccaagcaaccactgtggaaccacctgctgaattactataaggagcagaaagtgctggtg
gaggggcccctgaacaacctgcgggagagtctcatgcagttcagcaagccccggaaactg
gtcaacaccatcaaccctggagcccgcttcatgactacagccatgtacgatgcccgagag
gccatcatcccaggatcagtctacgaccggagcagccagggacgtccttcgaacatgtac
ttccaaacccacgaccagctcggcatgatcagtgctggccccagccacgtggccgccatg
aacattcccatccccttcaacctggttatgccaccaatgccgcccccagggtactttggg
caggctaatgggccagctgcaggccggggcacccccaaaggtaagacgggtcgtggagga
cgtcagaagaaccggtttgggcttcctgggcccagccagacaaacctgcccagcagccag
gccagccaggatgtggcatcacagcccttctctcagggtgccctgacgcagggctacatc
tccatgagccagccctcccagatgagccagcctggcctctcccagcctgagctgtcccag
gacagttaccttggtgatgagtttaagtcccagattgatgtggcactgtcgcaagactct
acgtaccagggagagcgggcataccagcatggtggagtgacggggctgtcccagtactag
DBGET
integrated database retrieval system
