Paracoccus sediminicola: PAF18_00420
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Entry
PAF18_00420 CDS
T09284
Symbol
rfbB
Name
(GenBank) dTDP-glucose 4,6-dehydratase
KO
K01710
dTDP-glucose 4,6-dehydratase [EC:
4.2.1.46
]
Organism
pdim
Paracoccus sediminicola
Pathway
pdim00521
Streptomycin biosynthesis
pdim00523
Polyketide sugar unit biosynthesis
pdim00525
Acarbose and validamycin biosynthesis
pdim00541
O-Antigen nucleotide sugar biosynthesis
pdim01100
Metabolic pathways
pdim01110
Biosynthesis of secondary metabolites
pdim01250
Biosynthesis of nucleotide sugars
Module
pdim_M00793
dTDP-L-rhamnose biosynthesis
Brite
KEGG Orthology (KO) [BR:
pdim00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00541 O-Antigen nucleotide sugar biosynthesis
PAF18_00420 (rfbB)
09109 Metabolism of terpenoids and polyketides
00523 Polyketide sugar unit biosynthesis
PAF18_00420 (rfbB)
01055 Biosynthesis of vancomycin group antibiotics
PAF18_00420 (rfbB)
09110 Biosynthesis of other secondary metabolites
00521 Streptomycin biosynthesis
PAF18_00420 (rfbB)
00525 Acarbose and validamycin biosynthesis
PAF18_00420 (rfbB)
Enzymes [BR:
pdim01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.46 dTDP-glucose 4,6-dehydratase
PAF18_00420 (rfbB)
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Motif
Pfam:
GDP_Man_Dehyd
Epimerase
RmlD_sub_bind
Polysacc_synt_2
NAD_binding_4
3Beta_HSD
adh_short
NmrA
NAD_binding_10
Motif
Other DBs
NCBI-ProteinID:
WBU56946
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All DBs
Position
complement(87265..88302)
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AA seq
345 aa
AA seq
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MKILVTGGAGFIGSAVIRQAIRDGHQVVNLDALTYAANLRNVDSVAGAPGYAFEHADIRD
RAALDRILAAHRPDAVMHLAAESHVDRSIDGPGAFIDTNVTGSYHLLEAARAYWVAAGRP
AQFRFHHVSTDEVFGSLGPEGRFTEDSPYDPRSPYSASKAASDHLVRAWHETYGLPVLLS
NCSNNYGPFHFPEKLVPVVILKALEGAPIPVYGDGGNIRDWLFVEDHADALLTVLTRGEV
GRSYHIGGESEARNIDLVRMICAHMDERRPDHAPHENLITFVPDRPGHDRRYAIDPSRIR
DELGWRPSVSLEEGLRRTVDWYLEHGDWWRPLLTRDGVGMRLGTG
NT seq
1038 nt
NT seq
+upstream
nt +downstream
nt
atgaagatcctcgtcaccggcggggcggggttcatcggctcggccgtgatccggcaggcg
atccgggacgggcatcaggtcgtcaatctcgacgcgctgacctatgccgcaaatcttcgc
aatgtcgacagcgtcgccggggcgccgggctatgccttcgaacatgccgatatccgggac
cgcgccgcgcttgatcgtatacttgccgcgcatcgacccgacgcggtgatgcatcttgcc
gccgaaagccatgtcgaccgctcgatcgacgggccgggtgccttcatcgacaccaatgtg
accggcagctatcatcttctcgaagctgcccgcgcctattgggttgcggcgggccgaccc
gcgcagttccggtttcatcatgtatcgaccgacgaggtcttcggctcgctcgggccagag
gggcggttcaccgaggacagcccctatgacccgcgcagcccctattcggccagcaaggcg
gcgagcgatcatctcgtccgagcctggcacgaaacctatgggctgccggtcctgctcagc
aattgctcgaataattacgggccgttccacttccccgaaaagctggtgccggtggtgatc
ctcaaggcactcgagggggcgccgatcccggtctatggcgatggcgggaatatccgcgac
tggctgttcgtcgaggaccacgccgatgcgctgctgacagtgctgacccgaggcgaagtc
gggcgcagctatcatatcggcggcgagagcgaggcccgcaatatcgacctcgtccgtatg
atctgcgctcatatggacgaacggcgcccggatcatgcgccccatgagaatctcatcacc
ttcgtgcccgaccgccccggccatgaccgccgctatgccatcgacccgagccgcattcgc
gacgagctcggctggcgcccgtcggtctcgctcgaagaagggctgcgacgcaccgtggac
tggtatctggaacatggcgactggtggcgcccgcttctcactcgcgacggggtcggcatg
cggctggggaccgggtga
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