Paracoccus sediminicola: PAF18_16015
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Entry
PAF18_16015 CDS
T09284
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pdim
Paracoccus sediminicola
Pathway
pdim03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pdim00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
PAF18_16015 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pdim03400
]
PAF18_16015 (ligD)
Enzymes [BR:
pdim01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
PAF18_16015 (ligD)
DNA repair and recombination proteins [BR:
pdim03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
PAF18_16015 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
Tuberculin
Motif
Other DBs
NCBI-ProteinID:
WBU58464
LinkDB
All DBs
Position
p1:complement(75027..77486)
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AA seq
819 aa
AA seq
DB search
MAKSPDPLADYNAKRDFSRTAEPRGQVGAGGAKRRFVVQKHAASRLHYDFRLEWNGVLLS
WAVTKGPSPDPGEKRLAVRTEDHPLDYGDFEGTIPNGEYGGGTVMLWDTGGWVPQEDFEK
GLSDGKLKFTLQGQRMKGGWALVRMRGKPNETRENWLLIKERDDYAEGNPDGFTKGKAVS
VKTGRNMTQIAEDAPAKAPPDPAPDRCRKRPAFVKPQLATMVAEAPEGDDWLHETKFDGY
RCLAALGKGGMRLYTRSGKDWTDRFHALDGAFDPLHCDAALIDGEVMAARIHGSAFSSLQ
KALKQGNALVFFAFDLLRIDGEDLRKLPQIERRERLAKLLSGAPSGGPLRLSEHIVGKGP
EVFANACKAGAEGIISKRIDAPYRSTRSKAWRKVKCTRRQEFVIVGYSPSDKAGRPFASL
LLASHEGGALRYKGRVGTGFSDAVMEAVARAMTARKNPPCHDVPDDIAREAQWVRADLVA
EVEFTEFTGDGYVRHASFLGLRDDKKADDVRLEAPMTDDTETTVQGIRISNADRPVFPDA
GCTKGNVARHYAQVGERMIALAGHRPLSLYRCPSGISDPCFFQKHDVGGMPGELSRVSVE
ESDGDSADYLYATRTESLIAAAQMGSIEFHIWGGRTDRLERPDRLVFDLDPDEGLGWTDV
QEAAFDVRDTLASLGLQSGAIVTGGKGVHVWLALRRTRGWDSVKLFAKTFAHVMAARAPD
RYTATMSKSKRRGRVFIDWLRNERGATAIAPYSLRARPGAPVAVPVTWDELKDLEGANSF
SMADMAARLEADCPAAQVQDSLQSLSDGVIDALQAFAEN
NT seq
2460 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaatcccccgatccgctggccgattacaacgcgaagcgggatttttcccgcacc
gcagagccgcgcggtcaggtgggggcgggaggcgcgaaacgccgtttcgtggtgcagaaa
cacgcggcttcgcgcctgcactacgacttcaggcttgaatggaacggcgtgctgcttagc
tgggcggtcacgaaggggccgtcgcccgatccgggcgaaaagcgcctggcggtgcggacg
gaggaccatccgctggactacggcgatttcgagggcacgatcccgaacggcgaatatggc
ggcggcacggtgatgctgtgggacaccggcggctgggtgccgcaggaggatttcgaaaag
gggctgagcgacggcaagctgaaattcaccctgcaaggccagcggatgaagggcggctgg
gcgttggtgcgtatgcgcgggaaaccgaatgagacgcgcgagaactggctgctgatcaag
gagcgcgacgattacgccgagggcaacccggacggctttaccaagggcaaggcggtctcg
gtcaagaccggccgcaacatgacgcagatcgccgaggacgcgcccgccaaggctccgccc
gatcccgcccccgaccgctgccgcaagcgccccgccttcgtcaagccgcagcttgccacg
atggtggccgaagccccagagggcgacgactggttgcacgagaccaagttcgacggctac
cgctgccttgcagcactcggcaagggtggcatgcggctctatacgcggtcgggcaaggac
tggaccgatcggtttcacgcactggacggcgcgttcgaccccctgcactgcgacgccgcc
ctgatcgacggcgaggtgatggccgcacgcatccacggctcggccttttcctcgctccag
aaggcgttgaaacagggcaacgcgctggtcttctttgccttcgacctcttgcgcatcgac
ggcgaggatctgcgcaagctgcctcagatcgaacgccgcgaacgtctggcaaagttgctg
tcgggtgcgccctccggcggccccctgcggctgagcgaacatatcgtcggcaagggtcca
gaggtgttcgccaatgcctgcaaggcgggtgcggaggggatcatcagcaaacgcattgac
gccccctatcgaagcacccgcagcaaggcgtggcgcaaggtcaaatgcacccgccgacag
gaattcgtgatcgtgggttattcgccgtccgacaaggccgggcggccctttgcctcgctg
cttctggccagccacgagggtggcgcgctgcgctacaagggcagggtcggcaccgggttt
tccgacgctgtgatggaggccgtggcccgggcgatgaccgcgcgcaagaatccgccctgc
cacgatgtcccggatgacatcgcgcgggaggcgcagtgggtgcgcgccgatctggtggcc
gaggtcgagttcaccgaattcaccggcgacggctatgtgcgtcatgccagcttcctcggc
ctgcgcgacgacaagaaagccgacgacgtgcgactagaggcaccgatgaccgacgatacc
gaaaccaccgttcagggcatccgcatcagcaatgcggaccgccccgtgttccccgacgca
ggctgcaccaagggcaacgtggcgcggcattacgcgcaggtcggcgaacgcatgatcgcg
ctcgccggacaccgtcccctgtcgctctatcgctgcccgtccggcatttccgatccgtgc
ttcttccagaagcacgatgtcggcgggatgcccggtgaactgtcgcgcgtcagcgtcgag
gaaagcgacggcgacagcgccgattacctctatgccacgcggaccgaaagcctgatcgcc
gccgcgcagatgggcagcatcgagttccacatctggggtgggcggaccgaccggctggaa
cgtcccgatcggctggtgttcgatctcgatcccgacgaggggctgggttggaccgatgtg
caggaggcggccttcgatgtgcgcgatacgctggcaagtctgggtttgcaaagcggtgcc
atcgtcaccggcggcaagggcgtgcatgtctggctggcactgcggcgcacccgcggctgg
gacagtgttaaactgttcgccaagaccttcgcgcatgtgatggcggcgcgcgcgcccgac
cgttacaccgccaccatgtcgaaatcgaaacgccgggggcgcgtcttcatcgactggctg
cgcaacgaacgcggcgcgacggcaatcgccccctattccctgcgcgcccgccccggcgcc
cccgtggccgtgccggtgacatgggacgaattgaaggacctggagggggctaacagcttc
tcgatggctgatatggccgcgcggctggaggcggattgcccggcggcgcaggtccaggac
agcttgcagagcctgagcgatggcgtgatcgacgcgcttcaggcttttgcagagaattga
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