Penicillium digitatum: PDIP_26520
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Entry
PDIP_26520 CDS
T04849
Name
(RefSeq) Regulator of nonsense transcript, putative
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
pdp
Penicillium digitatum
Pathway
pdp03013
Nucleocytoplasmic transport
pdp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pdp00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
PDIP_26520
03015 mRNA surveillance pathway
PDIP_26520
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdp03019
]
PDIP_26520
Enzymes [BR:
pdp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
PDIP_26520
5.6.2.5 RNA 5'-3' helicase
PDIP_26520
Messenger RNA biogenesis [BR:
pdp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
PDIP_26520
mRNA cycle factors
Common to processing body (P body) and stress granule
PDIP_26520
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
DEAD
Viral_helicase1
UvrD-helicase
SLFN-g3_helicase
Helicase_RecD
PIF1
nSTAND3
AAA_22
AAA_16
ATPase
AAA
Motif
Other DBs
NCBI-GeneID:
26230972
NCBI-ProteinID:
XP_014536113
UniProt:
K9G943
LinkDB
All DBs
Position
Unknown
AA seq
1079 aa
AA seq
DB search
MSYQPEDPSAGAEINEMPRGRARPRRHDDEDEGSDTFEDDDIDSIVGAPTNGHQKSQGNG
EEEIELPAHACAYCGIHNPSSVVKCLSCNKWFCSARGNTSSSHIVNHLVRARHKEVQLHP
GSSLGDTILECYNCGTKNVFLLGFIPAKSDTVVVLLCRQPCASMPSSKDMNWDTSRWQPL
IEDRSFLPWLVGAPTDQEQLRARHLSPQLIAKLEEMWKDNSQATLEDLDKATAVDDEPAP
VLLRYDDAFQYQNIFGPLVKIEADYDRKLKESQSQDGLIVRWDLGLNNKHLASFVLPKLE
LGDVKLAVGDEMRIKYNGELRPKWEGVGYVIKIPNNQSDEVTIELRAKGDHKSVPTECTH
NFMADYVWKSTSFDRMQCAMKTFAVDEQSVSGYIFHRLLGHEVAAAPMKTQIPKKFSVPG
LPDLNGSQINAVKSVLQRPLSLIQGPPGTGKTVTSATIIYHLAKINGGQVLVCAPSNVAV
DQLCERIHRTGLKTVRVTAKSREDVESAVGFLSLHEQVRMNDSNIELVKLNQLKAELGEL
SSQDEKRLKQLTRSAEREILTNADVICCTCVGAGDPRLSKGKFRTVLIDESTQSAEPECM
IPLVLGCKQVVLVGDHQQLGPVIMNKKAAKAGLNQSLFERLVILGCSPIRLNVQYRMHPC
LSEFPSNMFYEGSLQNGITIADRVRRDVDFPWPIIDDPMMFWSNLGNEEISASGTSYLNR
TEATNVEKIVTRFFKAGVQPRDIGIITPYEGQRSYIVSSMQATGTFKKEHYKEIEVASVD
AFQGREKDYIILSCVRSNDHQGIGFLSDPRRLNVALTRARFGLVILGNPKVLSKHPLWNC
LLQHFKERHCLVEGPLSNLQESLIQFSRPKQAYRGPQRFQMSFSQTSNAPNNAVNGRNGG
HRNEYHDSGSVVGYIPDDVSSVHGSALGGLGLPSGYPPMFQNFGESWPAISSGRRANGGR
PKGAPSVAGESVAATESDVTCSVTDGRSVDQGGVSLTGLSINDMGKQPSLSQSDRLKRYV
ESGGREPYRGGVPDNGSIFGGSSASIRVTRGAPGQNPHDDDDARSVSTAFASQVGGNYD
NT seq
3240 nt
NT seq
+upstream
nt +downstream
nt
atgagctaccaaccggaagacccctcagcgggagctgaaataaatgagatgccgcgcggc
cgcgcgcgcccacgccggcatgatgacgaagatgagggctctgatacctttgaagatgac
gacatagacagcatagtcggtgcacccacaaacgggcatcagaagtcccaaggaaatgga
gaggaggaaatagagctcccggctcatgcatgcgcgtactgtggcattcacaacccgagc
agcgtcgtcaaatgtctttcgtgcaataagtggttctgcagtgcacgtggcaacacctct
tcttcccatatcgtcaatcaccttgtccgagctcgtcataaggaagtccaactccacccg
ggctcttctttgggtgataccattctagaatgctataactgcggcaccaaaaatgtcttt
ttacttggcttcatccctgcaaagtcagataccgttgtcgttttgctctgtcggcaacca
tgtgcctcaatgccttcctccaaggacatgaattgggacacttcacgctggcagcctctc
attgaagatcgttctttcctcccctggctcgtgggagcacctactgaccaagaacaactc
cgagcccgtcacctcagtcctcaattgattgcgaaattggaggaaatgtggaaagataac
tctcaagcaaccctggaagacttggataaagccacggcagtggatgatgagcctgcgccg
gttctgcttcgctacgacgatgctttccaataccagaatattttcgggccactggttaag
attgaggccgattacgaccgcaagttgaaggaatctcaatcccaagatggactcatcgtc
cgctgggatcttggtctcaacaacaagcacctcgcaagctttgtgctacccaagcttgag
ctaggagatgtcaaattggccgtaggtgacgagatgcgcatcaaatacaatggtgaatta
cgtcccaagtgggagggtgtgggctatgtcatcaagatcccgaacaatcaatctgacgaa
gtcactatcgaactacgcgccaagggtgaccacaagtcagtccctactgaatgcacgcac
aattttatggcagactatgtttggaaatcgacttcttttgaccgcatgcaatgtgctatg
aagacatttgcagtggacgagcagagtgtctcaggctacatcttccatcgtctccttggt
catgaggtcgccgcagctcctatgaagacccagattccgaagaaatttagcgtcccaggt
ctgccagatctgaatggcagtcaaatcaacgcagtcaaaagtgttctccagcggcctctc
agtttgattcaaggtccacccggaactggtaagaccgttacctcggctaccatcatctat
caccttgccaagatcaatggaggccaggttcttgtctgcgctccgtcaaacgttgccgtt
gaccagctctgcgaacgtatccatcggacgggtctcaagaccgtgcgagtcaccgctaaa
tcccgcgaggatgtagaatctgctgttggtttcctttcgctgcatgagcaggttcgtatg
aacgatagcaacattgagttggtcaaactcaaccagctcaaagccgagcttggggagttg
tccagccaagacgaaaagcgcctgaagcaacttactcgctctgctgagcgtgaaattttg
accaacgcagatgtaatctgctgtacttgcgttggagcaggtgatcctcgtctttcaaag
ggcaagttccgcactgtcctgattgacgaatcaacccaatctgctgagcccgagtgtatg
atccccctggtcctaggctgcaagcaagttgtgctggttggtgatcaccagcaacttggt
cccgtaatcatgaacaagaaggccgccaaggctggtttgaaccaatctctgttcgagcgt
ctcgtcatcttgggctgctctcctattcgcttgaatgttcagtatcgtatgcacccgtgc
ctttcggaattcccgtccaacatgttctatgaagggtcgctgcagaacggtatcaccatt
gctgatcgtgtccgtcgtgacgttgacttcccttggcctattattgatgatcccatgatg
ttttggtccaatttgggcaatgaagagatctccgcgtccggcacctcgtaccttaaccgt
actgaagcgaccaacgtcgagaagatcgtcactcgcttcttcaaggcaggtgtccagccc
agggatatcggtatcatcactccatatgagggacagcggagctacatcgtcagctccatg
caggccaccggcaccttcaagaaggaacattacaaggagattgaggttgcgtcggttgat
gcattccaaggcagagagaaggattacatcatcctctcttgtgttcgttccaatgatcac
caagggattggtttcctgagcgatcctcgtcgtctcaacgtcgcccttactcgtgccaga
tttggactggtcatcctcggaaaccccaaggtcttgtctaagcatccattgtggaactgc
cttttgcagcacttcaaggaacgccactgtctcgttgaaggccccctgtccaatcttcag
gagtccttgattcaattcagtcgtcctaagcaagcgtacagaggcccgcagcgcttccag
atgtctttcagccagacaagtaatgctcccaacaatgcagtgaatggccgcaacggcggt
caccgtaacgagtatcatgattctgggtctgtggtgggctatatccctgacgatgtgtca
tctgtccacggctcggcacttggaggtcttggccttccatctggctatcccccgatgttt
caaaatttcggcgagtcctggcctgcgatctccagtggtcggcgagcaaatggtggccga
cccaagggagcacccagtgttgctggcgagtcggtcgctgctaccgagtctgatgtcacc
tgcagtgtcactgacggacgcagcgttgatcagggcggcgtcagtcttactggtctgagc
ataaatgacatgggcaagcaacccagccttagccaatctgaccgattgaaacgctacgtc
gagtctggcggacgcgagccttacaggggcggagttccggacaacggcagcatcttcgga
ggcagctctgctagcattcgcgtgacacgcggtgcgccgggccagaaccctcacgacgac
gatgatgcccgtagcgtctctactgctttcgctagccaagtcggtggcaactatgactga
DBGET
integrated database retrieval system
