Penicillium digitatum: PDIP_59620
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Entry
PDIP_59620 CDS
T04849
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
pdp
Penicillium digitatum
Pathway
pdp03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pdp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
PDIP_59620
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pdp03400
]
PDIP_59620
Enzymes [BR:
pdp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
PDIP_59620
DNA repair and recombination proteins [BR:
pdp03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
PDIP_59620
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
DNA_ligase_A_C
RNA_ligase
BRCT
DNA_ligase_IV
RTT107_BRCT_5
LIG3_BRCT
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
26234278
NCBI-ProteinID:
XP_014533188
UniProt:
K9GB89
LinkDB
All DBs
Position
Unknown
AA seq
974 aa
AA seq
DB search
MDSDEILSQELLGQEKEEDIKANELKKKLSGPAPARRKVGPNGKGAASLNPFERRRDVIE
RFISRWRKDVGNDIYPALRLILPDKDRDRPMYGIKEKAIGKMLVKIMKINKESEDGYNLL
NWKLPGQGATTRMAGDFAGRCFDVLSKRPMRTEPGDMTIDEVNEKLDKLSAASKEDEQLP
ILTEFYRRMNPEELLWLVRIILRQMKVGATERTLFDVWHPDAENLYSISSSLRRVCWELH
DPNIRLEGEERGIALMQCFQPQLAQFQMHSFEKIIARMKPTEDDHVFWIEEKMDGERMQL
HMAPDDSIQGGRKFGFWSRKAKEYTYLYGNGIYDENGALTRHLKDAFVDGVQSIILDGEM
ITWDPEQDAMVPFGTLKTAALAEQRNPFSNAPRPLFRVFDILHLNGRDLTKYALRDRRNA
LEKTIRPVYRRFEIHSYEEATTTTEVEKALRKVVAEASEGLVLKNPRSPYRLNERHDDWM
KVKPDYMTEFGESLDVVVIGGYYGSGHRGGALSSFLCGLRVDDSTQAAEKCWSFCRVGGG
FTAADYQEVRHHTEGKWKVWDAKKPPTNFIELAGGDAQHERPDMWIKPSDSIVLCAKAAS
VAISDQFRMGLTLRFPRFKKLRKDKDWKSALSVQEFLDLKSNAEQEHREKEFSVDNSRKK
RVKRATKKPLTVAGYDDNIDVQYLEPSGHIFDELNFFVMTESTSPEKKTKLQLEQLVKAN
GGKIYQTKTAAVDTLCVADRRTVKVASLQRSGEQNIIRPSWLIDCIKQNEIDIGLPDLLL
PFEPRHMFFMREDEEEEVVANVDQFMDSYARDTTVEELKEVFKQMEQNQEQPDHALDPET
IQRVEARIQEKINAGYTVPCGWLFRGLKFYFHSNGDRQDESASQELWKKSQPLYLARNTA
RFAGAESASSLKSSGTTHVIVDPETLSSADISSLRKSLAEKPGAKMPHLVSASWVDECWK
NRTLLDEERFPVPR
NT seq
2925 nt
NT seq
+upstream
nt +downstream
nt
atggattccgacgagatcctaagtcaggagctcctggggcaagagaaagaagaagacata
aaagcaaatgaactcaagaagaagctatcagggcctgctccagctcgccgaaaagttggt
cccaatggcaaaggtgctgcgagtctcaacccgttcgagcgccggcgcgatgtgattgag
cgcttcatttcacggtggcgcaaggatgtcggcaacgacatttaccctgctcttcgactg
attcttcccgacaaagatcgcgatcgaccaatgtacgggatcaaggagaaggctatcggg
aagatgctcgtcaagatcatgaagatcaacaaagaatcagaagatggatacaatcttctg
aattggaagcttcctggccagggtgctacaacacgcatggcgggtgactttgcgggaaga
tgcttcgatgttctctcgaagcggcccatgcggaccgagccgggtgacatgacgatcgac
gaggttaatgagaagctggataagctatcggctgcatcaaaggaggatgaacaactgcca
atcttgacggaattctaccggaggatgaaccccgaagaacttctgtggctcgtccgcata
atacttcggcagatgaaggttggtgctaccgagcgaacactcttcgatgtctggcatccc
gatgccgagaatctgtacagcatatctagcagtctgcggcgtgtttgctgggagctgcat
gatcccaatatccggcttgagggagaggagcgtggcatcgcgttgatgcaatgcttccag
ccgcagctggcccaatttcagatgcattcatttgagaaaatcattgctcgtatgaaacca
acagaagacgaccacgtcttttggattgaggagaaaatggatggtgagcgtatgcaactc
catatggcgcctgacgattcgatccaaggcggtcgaaaatttggcttctggtcgcgcaaa
gcgaaggaatatacctatctatacgggaacggaatttacgatgagaacggtgctctgaca
aggcatctaaaagatgctttcgtggatggagtacagagcattattctcgacggcgaaatg
attacctgggatcctgaacaggacgccatggttccctttggcacgctcaaaaccgcggcc
ctggcggaacaacgcaatccgttctcaaatgctccacgacccttgttccgtgtttttgat
atattacatctcaatgggcgcgacctaacaaagtatgcccttcgtgatcgtcgtaatgcc
ctggagaagactatccgacctgtatatcgccggtttgaaattcactcttatgaggaagct
actaccaccacagaagttgaaaaggctttgcggaaggttgtcgctgaggcgtcagagggt
cttgtattgaagaacccgcgctctccatatcgactgaacgaacgccatgatgactggatg
aaagtaaaaccagactatatgaccgaatttggagagtcccttgacgttgttgtgattggc
ggatactatggttcaggtcatcgaggaggtgcgctgtccagttttctttgtggactacga
gtcgacgacagcacacaagcagcagaaaaatgctggtccttttgtcgggttggtggcggg
ttcacagcagctgactaccaggaggtccgccatcatacagagggcaagtggaaggtgtgg
gatgcgaaaaagcctccgactaactttatcgaactggcgggcggagacgcccagcatgaa
cgtccagatatgtggatcaaaccatccgactcgattgtcttgtgtgcaaaagctgcatct
gtcgcaatcagtgatcaatttcgcatgggattgacgttgcgcttccctcgctttaagaaa
ttgcgcaaggacaaggactggaaaagcgcgctctcggttcaggagtttcttgatctaaag
tctaacgcagagcaagagcatcgggagaaggagttctctgttgataactctcggaagaaa
cgagtgaagagggccactaagaaaccgctcaccgttgccgggtacgacgataatatcgat
gtccagtatcttgaaccttctgggcatatcttcgatgagcttaacttctttgtaatgacc
gagtcgaccagcccagaaaagaaaacaaaacttcaactggaacaactcgtgaaggctaat
ggtggtaagatatatcaaaccaagacagctgcggtagacaccctctgtgttgctgatcgg
agaacggtcaaagtagcctcattacaaaggagtggagagcaaaacatcattcgaccatct
tggcttatcgactgcatcaagcagaatgagatagatataggcctgccagatcttcttctt
ccgttcgaaccacgacacatgtttttcatgagagaggacgaagaggaagaagtcgtagca
aatgtcgaccaatttatggacagctacgctcgcgatacaactgttgaggagctcaaggaa
gtattcaagcaaatggaacaaaaccaagagcagcccgaccatgccttggacccagaaacc
attcagagagtcgaggctcgcatccaggaaaaaataaatgctggttacacagtgccctgc
gggtggctcttccgaggcttgaagttttacttccactcgaacggggatcggcaggacgaa
tcagcctcccaagaactgtggaagaagagccaaccactctacttggctcgcaacacagcc
cggtttgcaggtgccgagagcgccagctccttgaagagctcgggcaccacacatgtgata
gtcgacccggagactttgtcgtcagcggacatatcatctctccgaaagtctctggccgag
aagccaggtgcgaaaatgccgcatcttgttagtgcgagctgggtggacgaatgctggaaa
aatcgcacattgctggatgaagagagattcccggttccgcgatga
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