Photobacterium damselae subsp. damselae: CAY62_17395
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Entry
CAY62_17395 CDS
T04927
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
pds
Photobacterium damselae subsp. damselae
Pathway
pds03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pds00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CAY62_17395
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pds03400
]
CAY62_17395
DNA repair and recombination proteins [BR:
pds03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CAY62_17395
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CAY62_17395
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
Helicase_C
ResIII
UvrB
DEAD
AAA_16
UB2H
AAA_30
Kinesin
Helicase_C_2
AAA_22
SWI2_SNF2
Beach
Motif
Other DBs
NCBI-ProteinID:
ARR51222
UniProt:
A0A1X9U677
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All DBs
Position
II:complement(586698..588650)
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AA seq
650 aa
AA seq
DB search
MSYNSFILHSDYSPSGDQVEAIAKLVDGVKSGASHQVLQGITGSGKTFTMANVIHRLKRP
TLILAHNKTLAAQLYSDMKRFFPENHVEYFVSYYDFYQPEVYIPASDRFIRKDSAINEQL
ERLRLSTTKALIEQRDVIVVASVSAIYGLGEPELYRAAQIPLYIGQKINRSQFIEQLTSL
QYQRTEKRLERATFRSHGDIVDIFPAESEKVAIRVEMLDDEIEQLYWLDPFSGKTLGALE
RYRVSPKTLYAASKDKITKASLLIQKDLEQRVAQLNQENRITEAARLYERTMYDIEMMQQ
LGYCSGLENYSCYLNDRDPTLPPTTLLDYLPKDGLLFIDESHVMIPQISAMFKGDQSRKE
TLIEYGFRLPSAKNNRPLDFNEFEKIKPQTLFVSATPGNYELSKAKTPVVEQIIRPTGLL
DPTIEVRSSSNQISNLLDEIKIRIEKGERTLVNTLTKKSAESLYEYMQEQSFKVSYLHSD
VKAEDRVRIIEQLRAGELDILIGINLLREGLDIPEASLVAILDADHAGFLRSKAALIQII
GRAARNKNGMAILYGNKVTPAMQQAIDESLDRRSRQIQYNHLHQINPITSIRQELVTSSS
SANPEFCTNLAQLCQQITDTEKLLLSLPEGENSESIRTKLDGLYRQFIYM
NT seq
1953 nt
NT seq
+upstream
nt +downstream
nt
atgagctacaattcttttatactgcattctgattattcaccgtcaggagatcaagttgag
gcaatagcaaagttggttgatggggtcaaatctggagctagtcatcaagtgcttcaaggt
ataacaggatctggaaagacatttacaatggcaaatgtcattcatcgtctcaagcgcccc
actttaattttagctcataataaaacattagcagcgcagctctatagtgatatgaagcgc
tttttccctgaaaaccatgttgaatatttcgtatcttattatgatttttatcagcctgag
gtttatattcctgctagtgatcgttttattcgtaaagattcggcaattaatgaacaatta
gaacggttgcgtctctcaacaacgaaagctttaattgaacaacgggatgttatcgttgtt
gcttcagtgtctgcaatttatggattgggagagcctgaattatatcgagcagctcaaatt
cctttatatatagggcagaaaattaaccgttctcaatttattgagcaactaacatccctt
caataccaacgaactgaaaagagacttgaaagagcaacgtttcgaagccatggtgatatt
gtagatattttccctgcagaatcagagaaagtcgctattcgagttgaaatgcttgatgat
gaaatagagcagttatattggttagatcctttttcaggaaaaactctcggcgctttagaa
cgttatcgcgtttcaccgaagactttgtatgcagcatcaaaagacaaaataacaaaagcg
agcttgctaattcaaaaagatttagaacaaagagtcgcacaactcaatcaagagaataga
ataactgaagcggcaaggctttatgaacgtacaatgtatgacattgagatgatgcaacaa
ttaggttattgctctggtttagaaaattattcatgttatttaaatgatagagacccaact
ttaccaccaacaacattgctcgattatttaccaaaagatggtttactgtttattgatgaa
tcacacgtgatgattccgcaaatatcagccatgtttaagggggatcaaagccgtaaagag
acgctcattgaatatggatttcgtctaccttctgctaagaataatcgtccgttagatttt
aatgaatttgaaaaaataaaacctcagactttatttgtgtcagcaacaccgggtaattat
gaattatctaaagctaaaacacctgttgtagaacaaataattcgacccacaggactgtta
gatcctacgattgaagtgcgaagttcctctaatcaaattagtaatttacttgatgaaata
aagattcgcatagagaagggcgaacgtacattagtgaatactctaactaagaaaagcgcg
gaatccctttatgaatatatgcaagaacaatcttttaaagttagctatttacattcagac
gttaaagcagaggaccgtgtacgaattattgagcagttacgagcaggagagttagatatt
ttaattggtataaatctattaagagaagggcttgatatccccgaagcatcgttagtcgcg
atattagatgctgatcatgccggttttttgcggtcaaaggcagctcttattcagattatt
ggtcgagcagccagaaataagaatggaatggcgattttgtatggtaacaaggtaactcca
gcaatgcagcaagcaatcgatgaatcacttgaccgccgttctagacaaattcaatataat
catcttcatcaaatcaatccaataacatctattcgtcaagaacttgttacttcttcaagt
tcagccaatccagagttttgtactaacttagctcaattatgtcagcaaataactgatact
gagaagttgctactaagtttacctgaaggagaaaattcagaatcgatcagaacaaaactg
gatggcctttatcgtcagtttatttatatgtaa
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