Prunus dulcis (almond): 117614742
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Entry
117614742 CDS
T07328
Name
(RefSeq) DNA ligase 4 isoform X1
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
pdul
Prunus dulcis (almond)
Pathway
pdul03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pdul00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
117614742
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pdul03400
]
117614742
Enzymes [BR:
pdul01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
117614742
DNA repair and recombination proteins [BR:
pdul03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
117614742
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
BRCT
DNA_ligase_A_C
PTCB-BRCT
RNA_ligase
DNA_ligase_IV
Motif
Other DBs
NCBI-GeneID:
117614742
NCBI-ProteinID:
XP_034199530
LinkDB
All DBs
Position
1:complement(5472614..5488798)
Genome browser
AA seq
1163 aa
AA seq
DB search
MSEETKFSVLCSLFNWMQRSKTSTLKRSKFRKFLDTFCKPADYFDSIRLILPSLDRERGS
YGLKESVLATCLIDALGMARDSEDALRLINWRKGGAKTGVNAGNFSLVAAEVLQRRQGVS
SGGLTIKELNDLLDRLASSENRAEKTSVLSTLIKKTNAQEMKWIVMIILKDLKLGTSEKS
IFHEFHPDAEDLFNVTCDLKLVCEKLRDRNQRHKRQDIEVGKAVRPQLAMRVGDATIAWK
KLHGKEVVVECKFDGDRIQIHKNGTEIHYFSRNFLDHPEYGHAMSDIVIQNVLADRCILD
GEMLVWDTSSNRFAEFGSNQEIAKAARDGLDSDRQLCYVAFDILYVGDTSVIHQSLKERH
ELLQKVVKPLKGRLEILVPNGGLNTHRSEGDPCWSLIARSVDEVERFFKETIENRHEGIV
LKDLGSKWEPSDRSGKWLKLKPDYIRAGSDLDVLIIGGYYGSGRRGGEVAQFLVGLAERP
VPNTYPRKFVSFCRVGTGLSDEDLEAVATKLKPYLRKYEYLKKAPPSFYQVTNNSKERPD
VWVESPEKSIILSITSDIRTIRSEVFSAPYSLRFPRIDRVRYDKPWHECLDVESFIELVH
SSNGTTQRGTDYGALQDTKTKHKKSSRKEEKRNLSVVPSHLVQTDVSSVKEDTLLFSNMM
FYFVNVPPTNSLDSLHKLVVENGGTFSMNLNNAVTHCVAADSKGIKYQAAKRHGDIIHFS
WVLDCCSQKRLLALQPKYYLFISESSKMKLQEEIDEFSDSYYWDLDLADIKQLLSNMYRS
EDSKTIDHYKKKYCPMEKWSRFHGCCIYFIPSTHSLKPDWEVLLRFTLRRLKIQVLISGG
RVTDSIAHATHLVVLSVQGLDVDFGTLLQSFTESEKRFLHNKKLHIVGSQWLEDCLERDQ
RLQEETYSLKPNGWEEFSIEEWKHDMDLEEAPSDVDTLQINNSSASPNQEGKEIGGKEAP
ENYRILASPERESKRKRGRPALTSMNKGKTGVNQARRTRVRIGRKPAKISGNESDEGGSH
DNTLRAEEVDKEESKHGMMSDASLDIQENEAIKDSESLQRDNAAVQEVAEDISFEDHSYK
IPDVEMIEKCNIEDSGKPEKLEVMADPVQAMLFDMIPSLAMKKVETTNTSIEKEKPAVDL
NAGPSKKKKVSYKDVAGELLKDW
NT seq
3492 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaggagaccaagttcagcgtcctatgcagcctcttcaactggatgcaaagaagc
aaaacctcaaccctaaagcgctccaaattccgcaaatttctcgacactttctgtaaacct
gctgattatttcgattcgattcgcctaattcttcccagcctcgaccgcgagcgcggcagc
tatggccttaaggagtctgtgctcgccacctgcctcattgacgctctcggcatggccaga
gactccgaggacgctcttcgcctcatcaattggcgcaaaggcggcgccaagactggtgtc
aatgccggcaacttctcgctcgtggccgccgaggtgctgcaacgtagacaaggagtgagt
tcaggtggattaacaatcaaggagttaaatgacttgcttgatcgtttagcttcaagtgaa
aatagggcagagaagacttcagttctttctacgttgataaagaagacaaatgcacaggaa
atgaagtggattgtcatgattattcttaaagatctgaagctgggaactagtgaaaagagc
atttttcatgaatttcatccagatgctgaagacttgtttaatgtcacatgtgacttgaaa
ttggtttgtgaaaagctgagggatagaaatcagcgtcataaacgccaggacattgaagtt
ggaaaagctgtacgcccacaactagctatgagagttggtgatgcaactattgcatggaaa
aagcttcatggtaaggaagtggttgttgagtgtaaatttgatggggatcgcatccaaatt
cataagaatggaactgaaatacattacttctcaaggaattttcttgatcaccctgaatat
ggacatgcaatgtcagacattgttatacaaaatgttctggctgataggtgtattcttgat
ggtgagatgttggtctgggacacatcttccaatcgttttgctgagtttggttcaaatcaa
gaaatagccaaggcagcaagggatggacttgacagtgatagacagttgtgctatgttgca
ttcgatatcctctatgttggagatactagtgtaattcaccagagcttgaaggaacggcat
gagcttctccagaaagttgtgaaacctttgaagggtcgtttagaaattttagtacctaat
ggtggtcttaacactcaccgttctgaaggggatccttgttggtcgcttattgctcgtagt
gtggatgaagtcgagaggtttttcaaagaaaccatcgaaaatagacatgaggggattgtt
ttgaaggaccttggttctaaatgggaacctagtgatcggagtggaaagtggttaaaatta
aagccagattacattcgtgcaggctctgatttggatgttcttatcataggcggatactat
ggttctggacgtcgtggaggggaggtagctcaattcttggtgggtcttgctgaacgtcca
gtaccaaatacatatcctagaaaatttgtatccttttgcagagtgggcactggactttct
gatgaggatctagaagctgttgcaaccaaattaaagccttatttgaggaaatatgagtac
ctaaaaaaggctccaccaagtttttatcaagtaacaaacaattcaaaagagagaccagat
gtttgggttgaaagccccgagaaatcaataatactttctataacgagtgacatcagaact
ataaggtctgaggttttttctgcaccatacagcctgagatttccacgtattgatcgagtt
agatatgataaaccttggcatgaatgtcttgatgtggaatcgtttattgagcttgtacat
tcaagcaatgggaccacacaaaggggaacggattacggtgctctgcaggatactaaaacg
aaacacaagaaatcctctagaaaggaagaaaaaagaaatctttctgttgttccctctcat
ttagttcagactgatgtttccagcgtcaaggaggacacattactattttcaaatatgatg
ttttactttgttaatgtgcctcccactaattctcttgattccttgcacaaacttgttgtt
gagaatgggggtactttctctatgaatttgaataacgcagttacgcactgtgttgcagct
gatagcaaagggattaaatatcaggcagcaaagcgtcatggagatataattcatttctct
tgggtattggattgttgttctcaaaagagacttcttgctttacagccaaagtactatctc
ttcatatctgaatcttcaaaaatgaagttacaagaagaaattgatgaattttctgactcg
tactactgggatcttgaccttgcagacatcaagcagcttttaagcaacatgtatagatct
gaggattccaaaactatcgaccattacaagaaaaaatactgtccaatggagaaatggtct
cgctttcacggctgctgcatttactttatcccatcaactcattccttgaaaccggattgg
gaagtccttttacgattcacactcagaaggttgaagattcaagttctcataagtggtggc
agagtcactgacagtattgctcatgcgactcatttggtagtcttgtcagtgcagggtctt
gatgtcgattttggaactttattgcaaagtttcactgaatcagagaaacgatttctgcat
aacaaaaagttgcatattgttggatctcaatggttggaagactgcttggaaagggaccag
agactgcaagaagaaacatatagcttaaaacccaatgggtgggaagaattcagcattgaa
gagtggaaacatgacatggatctagaagaagcaccctctgatgtggacactctgcaaatc
aacaattcttctgcttctcctaaccaagaaggaaaagagataggaggcaaagaagctcca
gaaaactataggatcttggcctcacctgagagggaaagcaaaaggaaaagaggaagacct
gctctcacaagcatgaacaaaggaaaaactggtgtcaaccaagctcggagaacacgggtg
cgcattggaaggaagcctgctaaaatatcaggaaatgagtcagatgaaggtggctctcat
gataacacattacgtgcggaagaggttgataaggaagaaagtaaacatggaatgatgagt
gacgcaagtttagacatccaagaaaatgaagcaattaaagattctgaatcattacaaaga
gacaatgcagctgtgcaagaggttgctgaagacattagctttgaggaccattcttataaa
attcctgatgtcgaaatgattgagaagtgtaatatcgaagacagtggaaagccggagaaa
cttgaagttatggctgatcctgttcaagccatgttgtttgacatgattccaagtcttgct
atgaagaaagttgaaactacaaatacgagtattgaaaaggaaaaaccagcagtagatctg
aatgcaggaccttcaaagaaaaagaaagttagctacaaggatgttgctggtgagctgctc
aaggattggtaa
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