Prunus dulcis (almond): 117627822
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Entry
117627822 CDS
T07328
Name
(RefSeq) E3 ubiquitin-protein ligase COP1-like
KO
K10143
E3 ubiquitin-protein ligase RFWD2 [EC:
2.3.2.27
]
Organism
pdul
Prunus dulcis (almond)
Pathway
pdul04120
Ubiquitin mediated proteolysis
pdul04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
pdul00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
117627822
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
117627822
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pdul04121
]
117627822
Enzymes [BR:
pdul01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
117627822
Ubiquitin system [BR:
pdul04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
117627822
Multi subunit Ring-finger type E3
Cul4 complex
Target recognizing subunit (DCAF)
117627822
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
zf-C3HC4_2
zf-C3HC4
zf-C3HC4_3
WD40_like
zf-RING_2
zf-C3HC4_4
zf-RING_UBOX
zf-RING_5
U-box
DUF1664
zf-RING_10
Motif
Other DBs
NCBI-GeneID:
117627822
NCBI-ProteinID:
XP_034215967
LinkDB
All DBs
Position
5:complement(3224696..3232739)
Genome browser
AA seq
668 aa
AA seq
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MEECSTGALVPAVKPEPKPSSIEASADPGSNDVDRPAHEKGLTEVDKDLLCPICMQLVKD
AFLTACGHSFCYMCIITHLRNKSDCPCCAQFLSTNQLFPNFLLDKLLKKASARQISKSAS
PVEHFRQALQQGCEVSIKELDTLLTLLAEKKRKMEQEEAERNMQILLDFLNCLRKQKVEE
LNEVQTHLQFIKEDIGAVERRRMDLYRARDRYSVKLRMLGGDDSISGARKSWPSSIDNNT
SSLSGRAGMSSWNLQPKKLDGWGLQKKDALSASDSQYMTQSGLAVARKKRVHAQFDELQE
CYLQKRRQMANQPYTQQERDKNVIQREGYTTGLADFQSVLTTLTRYSRMRVIAELRHGDL
FHPANIVSSIEFDRDYELFATAGVSRCIKVFDFSSVVNDPADVHCPVVEMPTRSKLSCLS
WNKFTKNHIASTDYEGIVTVWDVNTRQSVMEYEEHEKRAWSVDFSCTEPTRLVSGSDDCK
VKVWCTRQETSVLDIDMKANICCVKYNPGSSNCIAVGSADHHIHYYDLRNPSQPLHVFTG
HKKAVSYVKFLSNYELASASTDSTLRLWNVKENIPVRTFKGHTNEKNFVGLTVNGEYIAC
GSETNEVFVYHKEISKPVTWHRFGSPDLDDTDDDAGSYFISAVCWKSDSPTMLTANSQGT
IKVLVLAA
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atggaggagtgctcgactggggctctagtcccggcggtgaaaccagaaccaaagccatca
agcatcgaggcttcggctgatccagggagcaatgacgtggatcgtccagctcatgagaaa
ggattgacggaggtggacaaggacttgttgtgtccaatttgcatgcagctggtaaaggat
gccttcctcacagcatgtggtcacagcttctgctacatgtgcatcattacccacctccgc
aacaagagtgactgcccttgctgcgcccagttcctcagcaccaaccaattgttccccaat
ttcctgctggataagcttctgaagaaggcatcggctcgtcaaatttccaaaagtgcgtcc
cctgtggagcattttcgtcaggcattgcaacagggatgtgaagtgtccatcaaggagcta
gacaccctgttgacactcctggctgagaagaagaggaaaatggaacaagaagaggcggag
agaaatatgcaaatactgcttgacttcttgaattgcctaaggaagcaaaaagttgaagag
cttaatgaggtgcaaacccatcttcaatttattaaagaggacataggtgcagtagagaga
cgcagaatggacttgtaccgtgcgagggacagatactccgtcaagctgcggatgcttgga
ggggatgattctatttctggtgcaagaaagtcatggccttcctccatagataacaatacc
agttctctcagtgggcgagcagggatgtcttcatggaatcttcaacctaagaaacttgat
ggctggggacttcagaaaaaggatgctttaagtgcatcagactcccagtatatgactcaa
tctggtcttgctgtagccagaaagaagcgggtccatgcacagtttgatgaactacaagag
tgttacctgcaaaagcgacgccagatggcgaaccaaccatatacccagcaagaacgggac
aaaaatgtgatacaaagagaaggttacactacaggccttgctgattttcaatcagtgctt
accacgttaacacggtatagtcggatgagggtcattgctgaacttaggcatggagatcta
tttcacccagccaatatagtatcaagcattgaatttgaccgtgattatgaattgttcgct
actgctggggtttcacggtgcataaaagttttcgacttctcctcagttgtgaatgatcca
gctgatgtgcattgtcctgttgtggagatgcctacacgttcaaagcttagttgcttgagc
tggaacaagtttacgaaaaaccatatagctagtactgattatgagggaatagtaacagtt
tgggatgtaaatactcggcaaagtgtcatggagtatgaagagcatgaaaaacgtgcttgg
agtgttgatttttcatgcacagagcccacgaggcttgtatctggtagtgatgattgtaag
gtaaaagtttggtgcacaaggcaggaaactagtgttcttgacattgacatgaaagcaaac
atttgttgtgttaagtataatcctggatccagcaactgcattgcggttggttctgcagac
catcacatccactattatgatttaagaaatccgagccagccactccatgtgttcaccggg
cacaagaaagctgtttcttatgtgaaattcttgtcaaactatgagcttgcctctgcatcc
actgatagcacattgcggttatggaatgtgaaggaaaatattccagttcgtacgtttaaa
ggtcacacaaatgagaagaacttcgtaggtcttacagtaaacggggaatacattgcttgt
ggcagtgaaacgaatgaagtgtttgtgtatcataaggaaatctccaaacctgtgacttgg
catagatttggatcgcctgatttggatgacaccgatgatgatgcagggtcttacttcatc
agtgctgtatgttggaagagtgatagccctaccatgctaactgctaacagtcagggaacc
attaaagtgctggttcttgctgcttaa
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