Prunus dulcis (almond): 117631705
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Entry
117631705 CDS
T07328
Name
(RefSeq) uncharacterized protein LOC117631705 isoform X1
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
pdul
Prunus dulcis (almond)
Pathway
pdul03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pdul00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117631705
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pdul03000
]
117631705
03019 Messenger RNA biogenesis [BR:
pdul03019
]
117631705
04121 Ubiquitin system [BR:
pdul04121
]
117631705
Enzymes [BR:
pdul01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
117631705
Transcription factors [BR:
pdul03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
117631705
Messenger RNA biogenesis [BR:
pdul03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
117631705
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
117631705
Ubiquitin system [BR:
pdul04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
117631705
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
Baculo_IE-1
zf-UDP
zf-RING_2
Nup35_RRM
zf-RING_UBOX
Rtf2
FYVE
Motif
Other DBs
NCBI-GeneID:
117631705
NCBI-ProteinID:
XP_034220876
LinkDB
All DBs
Position
6:22869631..22875348
Genome browser
AA seq
811 aa
AA seq
DB search
MSDKGEKTCPICAEEMDFTDQQLKPCKCGYEVCVWCWHHIMEMAEKDGKEGRCPVCRTTY
DKEKIVGVAANCQKLVADINLKRKQKKPKGPEAKKQLTDVRVLQRTLVYVIGLPLNLANE
DLLKRREYFGQYGKVLKVSVSRTANGVIQQSPNNGCCVYISYTKEYEAARCIQSVHSFML
DGKCLRACFGTTKYCHAWLKNVPCNNPDCWYLHDFGSQEDSFTKDGLVSAFERSKDHQNI
GVTNNLHRRPGKGLPPPMDECSKCERSTEAKPLVNQPSDIAGNVVKSSCADSDFRRSIPA
RAPWVMEVSSSVPTATSSPGSERLPHQNPETSNDLHPLSSEVVRNESSTRNVRSIISAEG
CKGHFNGLDPLVLNEQNINNNGQVAVSNTASEALVDRTSIKDLGCLLPNNGIGRGIRATS
TALSSNKNICYPSSNLSNKPVDNKGNSISEFDRTVEPTSVLPEMGSGKYLGGSDTSKPSI
DCSLAYDIGESGIISNILAMDLDASEGSLSPFHNLIKLLGETDKDCSLLKVQSSRKLLDK
KQSRFSFAQQEDSCDNVWQASNDYSALSDLMDKKDSFVDLESNKFLRIPSYASSKVPEAP
SSVPPGFSVPSRAPPPGFPSHLSSRRVNQAFDSSVNHLLQPSCISTGNSGNTGDVKNNGQ
AILEVGEGIVARGLSRRATLSQFNTSEPDASRHLMRQQPTSTQQNLGFQDHFSTRYSSLN
DAHRISPQHPDQFQPNNTSSFVQSSTQQLSDVHVSNSHWAQWNEVRSVSDLGISDLLRND
RLGFTNLIPCYENMKSPAGCFSHLNNRAFEM
NT seq
2436 nt
NT seq
+upstream
nt +downstream
nt
atgagtgacaagggagaaaaaacgtgtccaatttgcgctgaggagatggattttacggat
cagcagctgaagccgtgcaaatgtggttacgaggtgtgtgtttggtgttggcatcacatt
atggaaatggcagagaaggatggaaaggagggtcgttgtccagtgtgccgtacaacttat
gacaaagaaaaaattgtcggagtggcagcaaattgtcaaaagttggtggctgatattaat
ctgaagcggaaacagaaaaagcccaagggacctgaagcaaagaagcaacttactgatgtt
agagttctccaacggaccctagtatatgtgattggattacctcttaaccttgcaaatgaa
gaccttcttaagcgcagggagtattttggccagtatggaaaggttttgaaggtttctgtt
tctcgtacagcaaatggggttattcaacagtctccaaacaacggttgttgtgtgtacata
tcatacacaaaggaatatgaagcagctcgatgtattcaatcagtacacagttttatgtta
gatggtaaatgcttgagggcatgttttggaaccacaaagtactgccatgcgtggttgaaa
aatgtaccttgcaacaatccagattgttggtatttgcatgattttggctctcaggaagat
agttttaccaaggatggattagtttcagcctttgaaaggagtaaagatcatcaaaatatt
ggtgttacaaataatctgcatcggcgtccggggaaaggtttacctcccccgatggatgag
tgtagcaaatgtgaaagatcaacagaagctaaaccacttgttaatcaaccatcagatatt
gctgggaatgtggttaagagttcttgtgcagattctgactttagaagatctattcctgca
agagcaccttgggtcatggaagtctcctctagtgtgcccacagcaacaagttctccaggt
tccgaaaggctaccccatcaaaatcctgagacatctaatgatcttcatcccctttcatcc
gaagttgttaggaatgaaagttctacccgcaatgtaagatctattatatctgcagaaggc
tgtaaagggcattttaatggtttggatccactggtactgaatgaacagaatatcaacaat
aatggtcaagtagctgtatcaaatacagcttcagaagctctagtagatagaacttccata
aaagacttaggttgtctattaccaaacaatggtattggtcgaggtattagagcaacatcc
actgccttatcaagcaacaaaaacatatgctatccatcatcaaacttgtcaaataaaccc
gttgataacaaaggcaatagcatcagtgaatttgataggacagttgaacctaccagtgtg
ttacccgagatgggatcaggcaagtacttgggagggtctgacaccagtaagcccagtatt
gactgcagtcttgcttacgatataggagagagtggcataatctcaaatattttggcaatg
gacttggatgcatctgaaggctctctatctccttttcacaatctcattaagttgttgggt
gaaactgataaagattgcagtctcctgaaagtacaaagttcaagaaagcttcttgataaa
aagcagtccaggttctcatttgcccaacaagaggactcttgcgataatgtatggcaagca
tcaaatgactactctgcattatctgatttgatggacaagaaggattccttcgtagatctt
gagtctaataaatttctcaggattccttcatatgcctcttctaaagttccagaagctcct
agttcagtcccgccaggattttcagtgccaagcagagctccacctccagggtttccatct
catttgagcagcaggagggtgaaccaagcttttgacagttctgtgaatcatttgttgcaa
ccatcttgtatatcaactggtaattctggcaacacaggggatgttaagaataatggtcag
gcaattctggaagttggtgaaggaatagtggcgagagggttgagtaggagagcaacttta
tctcagtttaatacttctgagcctgatgcaagtcgccatttgatgaggcagcagccaact
tctacacagcagaacttaggatttcaagaccacttcagtactaggtactcttccctaaat
gatgcacatagaatttctccacagcatccagatcaattccagcccaacaatacatcttca
tttgtacagtccagcactcaacaactcagtgacgtgcatgtatcaaacagtcattgggct
caatggaatgaggttaggagtgtgagcgatcttggtatatcagatctactgagaaatgat
agattgggatttaccaacctcattccctgttatgagaatatgaagtctccagcaggttgc
ttcagccatctaaacaacagagcatttgaaatgtga
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