KEGG   Prunus dulcis (almond): 117632347
Entry
117632347         CDS       T07328                                 
Name
(RefSeq) DNA ligase 1-like
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
pdul  Prunus dulcis (almond)
Pathway
pdul03030  DNA replication
pdul03410  Base excision repair
pdul03420  Nucleotide excision repair
pdul03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:pdul00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    117632347
   03410 Base excision repair
    117632347
   03420 Nucleotide excision repair
    117632347
   03430 Mismatch repair
    117632347
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pdul03032]
    117632347
   03400 DNA repair and recombination proteins [BR:pdul03400]
    117632347
Enzymes [BR:pdul01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     117632347
    6.5.1.6  DNA ligase (ATP or NAD+)
     117632347
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     117632347
DNA replication proteins [BR:pdul03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    117632347
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     117632347
DNA repair and recombination proteins [BR:pdul03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     117632347
   NER (nucleotide excision repair)
    Other NER factors
     117632347
   MMR (mismatch excision repair)
    Other MMR factors
     117632347
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Other DBs
NCBI-GeneID: 117632347
NCBI-ProteinID: XP_034221685
LinkDB
Position
6:complement(8155517..8164125)
AA seq 790 aa
MLSRSLCSCYCLRPHSLHHLSTSISLFRSKPSSLSLTLISLSPKNPNLRAMSSRPSAFDA
LMSGARAAAAKKKPQASPSKKRKTLEPNPIENPQLLLKPENGTPTQAPESKEVKEALESS
SNGGQVVPLAKKVCAAAGAQERTAELKSRIALLKKKAGDFDPKLMANWGEGERVPFAFVC
LAFDLIANETGRIVITDIVCNLLRTVMHTTPEDLVPVVYLAANRIAPAHEGLELGIGDAS
IIKALAEACGRTEAHVKKQYKELGDLGLVAKASRSSQSMMRKPDSLTVTKVFSTFRQLAK
ESGKDSQEKKKNHIKALLVAATDCEPQYLIRLLQTKLRIGLAEQTLLAALGHAAVHAEKH
STPPSHIQSPIEEAAKIVKQVYSLLPDYDKIIPALLSGGVWNLPKTCSFTLGVPVGPMLA
KPTKGVSEIVQKFQDTEYTCEYKYDGERAQIHYMDDGSVEIYSRNAERNTGKFPDVVVAV
SRLKKSSVTSFVLDCELVAYDRVKQKILPFQVLSTRARKNVAMSDIKVDVCIFAFDMLYL
NGRPLIQEQLIVRRESLYDSFVEEAGFFQFATAITSNDIEEIQKFLDAAVDSSSEGLIIK
TLNKDATYEPSKRSLNWLKLKKDYMESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDS
NNEEFQSICKIGTGFSEAMLEERSASLRTKVIPKPKSYYRYAETMNPDVWFDASEVWEVK
AADLTISPVHRAAVGIVDPIKGISLRFPRLVRVREDKPPEQASSSAQVAEMYSAQANTRS
NNQDDNNEDD
NT seq 2373 nt   +upstreamnt  +downstreamnt
atgctctcccgatcactgtgttcatgctattgcctacgcccacactctctccaccatctc
agcacctccatttctctcttccgctccaaaccctcttctctctctctcaccctcatttcc
ctctccccgaaaaaccctaatcttcgcgccatgtcctctcgcccctccgccttcgacgct
ctcatgtccggcgctcgcgccgccgccgccaaaaaaaagccccaagcttcaccctccaag
aagcgaaaaaccctagaacctaaccctattgaaaacccccaattgctattgaaacccgaa
aatggcactccaacccaagccccagaatccaaggaagtcaaagaagctctagaaagttct
agtaatggcggccaggtggttcccctcgcgaaaaaagtgtgcgcggcggcaggtgctcag
gagcggacggcggaattgaagagcagaatcgctctgttgaagaagaaagccggcgacttt
gacccgaaattgatggcgaattggggcgagggcgagagggttccgtttgcgtttgtttgt
ttggcttttgatttgattgctaacgagacgggtcggattgtgatcacggatatagtgtgt
aacctgttgaggactgtaatgcacaccacgcctgaggatttggtgcccgtggtttatctg
gcagcaaatcggattgcgccggcgcatgagggattggagcttggaattggggatgcttcg
attatcaaggcgcttgcagaggcttgtgggaggactgaagcacatgttaagaaacaatac
aaggaattgggagatttgggtcttgttgcaaaagcaagccgttcatctcaatctatgatg
cgcaagcctgattcgttaactgtcaccaaggttttcagtacatttcgtcaacttgctaag
gaatctgggaaggatagtcaggagaagaaaaagaaccatatcaaggcacttcttgttgct
gccactgattgtgaacctcaatatctgatccgtttacttcagacaaagttgcgaattggg
ttggcagagcagactctcttagctgcattgggacatgctgcagtgcatgctgaaaaacat
tctacaccaccttctcatattcagagtcctatagaagaggctgcaaagattgttaagcaa
gtgtactctctacttcctgattacgataaaatcatccctgcccttttaagtggtggtgtg
tggaatcttccgaagacatgtagctttactttgggtgtcccagttggacctatgctagca
aagccaactaaaggtgtatctgagattgtacagaagtttcaggatacagaatacacctgt
gaatacaagtatgatggagaacgtgcccagatacattacatggatgatggttctgttgag
atatacagtcgaaatgctgaacgaaacactggaaagttccctgatgttgttgttgcagtg
tcgaggttaaagaagtcatctgtaacgtcatttgttttggattgtgaattggttgcttat
gaccgtgtaaaacagaaaattcttcctttccaggtactcagcactagagctcgtaaaaat
gtggccatgagtgatattaaggtcgatgtctgcatatttgcttttgacatgttgtatctt
aatggacgaccactaattcaggaacaactgatagttcgtagagagagtctttatgactct
tttgtggaagaagctggattttttcagtttgccacagcaataacatcaaatgatattgaa
gaaatacaaaagtttcttgatgctgcagttgattcaagttctgagggtttaattatcaaa
acattgaacaaagatgctacttatgagccttcaaagcggtcacttaactggctgaaattg
aagaaagattatatggagagtattggggactcactagacttggtacctattgctgctttc
catggccgggggaaacgtacaggtgtctatggtgctttcctccttgcttgttatgatagc
aacaatgaagagtttcaaagcatttgtaaaataggcactggattctctgaagcaatgctt
gaagaacgttctgccagtctccgtactaaagtgatacccaaacctaagtcatactatcgt
tatgcagagacaatgaatcctgatgtatggtttgatgcctctgaggtttgggaagtgaaa
gctgcggacttgactattagccctgttcatcgcgccgcagttggcatagtggatcctatt
aagggtatttctcttcgatttccacgtcttgttcgtgttcgggaagataaacctccagag
caagcctcatcatctgcgcaggttgctgagatgtattctgctcaagctaacactcgttcg
aacaatcaagatgacaacaacgaagatgattaa

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