Prunus dulcis (almond): 117633162
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Entry
117633162 CDS
T07328
Name
(RefSeq) regulator of nonsense transcripts UPF3 isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
pdul
Prunus dulcis (almond)
Pathway
pdul03013
Nucleocytoplasmic transport
pdul03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pdul00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
117633162
03015 mRNA surveillance pathway
117633162
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdul03019
]
117633162
Messenger RNA biogenesis [BR:
pdul03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
117633162
mRNA cycle factors
P-body specific factors
117633162
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_2
Motif
Other DBs
NCBI-GeneID:
117633162
NCBI-ProteinID:
XP_034222753
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Position
1:41218103..41227266
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AA seq
539 aa
AA seq
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MKDPLVRTKVLVRHLPPSLSHSDLLQQIDHQLADRYNWFCFRPGKNSQKNQRYSRAYIDF
KRPEDVFEFAEFFDGHVFVNEKGSQFKAIVEYAPSQRVPKPCTKKDGREGTIYKDPDYLE
FLKLIAKPVEHLPSAEIQLERKEAEQAGGAKEPPIITPLMEYVRQKRAIGSGTQVSSVVR
KVRRRAGAASLNKRGSTSTKRVSEKKKYILKDSAKHTSRKDKSTFTVVPRREDQLASSSG
KETLENEIGSVSGIPVIADSGKKKILLLKGKEREIPSAPEGMLPQGSVTSAGSYVSAAPK
QNQRREAGGKLIRSILLNNEGRQSQSSTEIQPQQKILSLNSDVKRASRPSNARLGLNGQV
SNNEPNSMSSEGDRKRATVDKFSKKDLHGTTNVSEKQEKHTRNKDRPDRGVWAPLRRADS
SHASDEHLPSVPQRPQLPSDSFEVSHGEVKDDTSYGSRTGEVINPTSGRNSSHVENGSQR
HFGRRGSAHNIKDDNSMNVSEGKPSKRGATVHGAPEILSFSQNTKFLICPKAIISVIVA
NT seq
1620 nt
NT seq
+upstream
nt +downstream
nt
atgaaggacccattggtgaggacgaaggtgttagttcggcacttgcctccgtctctgtct
cactccgatctccttcagcaaatcgaccatcaacttgctgaccgctacaactggttttgc
ttccgtccgggaaagaacagccagaagaatcagaggtactctcgagcctacatagacttc
aagcggcctgaagatgttttcgagtttgctgaattctttgatggacatgtgtttgttaat
gagaaggggtctcagttcaaggctatagttgaatatgcaccctcacagcgtgttccaaaa
ccatgtaccaaaaaggatggccgtgaagggactatatataaagatcctgattatttggag
ttcctaaaacttattgcgaagcctgttgagcatcttcctagtgcagaaatacagctggaa
agaaaggaagcagaacaagctggtggtgcaaaagagcctcctattattacccccctcatg
gagtatgttcgtcagaaacgagctatcggaagtgggacccaggtttcatcagttgttcgg
aaggttagaagaagagcgggggctgcatctcttaacaaacgtggctcaacttctacaaaa
cgggtctctgagaagaaaaagtacatattaaaggacagtgctaaacatacaagtcgaaaa
gacaagtcaactttcactgtggtccccaggcgagaggatcaattggccagttcaagtgga
aaagaaaccttagaaaatgaaattggttctgtttcgggaatccctgtgattgcagactct
ggaaagaagaaaatcctactccttaaaggaaaagaacgtgaaataccttctgctcctgaa
ggtatgctaccacaggggagtgtaacatccgctggaagttatgtttcagctgctccaaag
cagaaccaaaggcgtgaggctggtggaaagttgatcagaagcatacttttaaataatgag
ggacgccaaagtcaaagttcaaccgaaattcagcctcagcagaaaattctaagtctgaac
tcagacgttaagcgggcgtctcggccctccaatgcaaggttagggttgaatggtcaagtc
tctaataatgagcctaactcaatgagctctgaaggggatagaaagagggctacggttgat
aaattttcgaagaaggacctgcatggtaccactaatgttagtgagaagcaagaaaaacat
acaagaaacaaggatagacctgatcgtggtgtttgggctcctcttcgtcgtgctgatagt
tcacatgctagtgatgagcatttgccatccgtgccacaacgtcctcaacttccctctgat
tcctttgaagtttcccatggagaagtgaaggatgatacctcttatggaagcaggactggg
gaagttataaatcctacaagtggacgtaatagttctcatgtagagaatggttcacaaaga
cattttggtcgccgtggaagtgcccataatataaaagatgataattctatgaatgtaagt
gagggaaagccatctaaaagaggtgctactgttcatggtgcccctgagattctttcattc
agtcagaacactaaattcctcatatgtcccaaggcaatcatctctgttatcgtggcttaa
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