Pseudomonas donghuensis: BV82_1538
Help
Entry
BV82_1538 CDS
T07361
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pdw
Pseudomonas donghuensis
Pathway
pdw03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pdw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BV82_1538 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pdw03400
]
BV82_1538 (ligD)
Enzymes [BR:
pdw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BV82_1538 (ligD)
DNA repair and recombination proteins [BR:
pdw03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BV82_1538 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
KDO00444
LinkDB
All DBs
Position
3469449..3471932
Genome browser
AA seq
827 aa
AA seq
DB search
MAKPLQEYARKRNFDATPEPVGSHAQGKKAAHALQYCIQKHHASHLHYDFRLELDGTLKS
WAIPKGPSLDPKIRRLAVHVEDHPLDYANFEGRIPEGHYGAGEVIVWDRGVWIPEEDPRK
AYAKGKLRFRLQGEKLSGTWNLFRTHLAGTKEQWLLVKSDDAQARPQADYDILEAEPDSV
LSERSLTARRPRAAANKTTRKARPASKSKLDGASKAALPASFKPQLATLVETPPEGDWGY
EVKFDGYRILARINGEQIRLFTRNGHDWTAKLPRQAKALAGLGVQSAWLDGEMVVANEHG
VADFQALQNAFDQACDEQIVYYLFDLPYLNGMDLRQCPLEQRRSALAALLEKADDKCLRF
SAGFDQRVESLLDSACKMKMEGLIGKRLGSHYVNRRSSDWIKLKCKQRQEFVIVGFTDPK
GSRAAFGALLLALHDERGELRYAGKVGTGFNSATLAHLHQRLAPLEVGKPPLPTPPTGAE
AKGVHWLKPQLLAEVAYAQMTRDGVVRHSVFHGLRDDKPAKAIGLEQPVKSPASNTPTLQ
LTHPQRVVDASTGITKRQVGEYYAQVAEWILPHLKRRPVALVRAPDGLAGELFFQKNATP
LNIPGLERHDKAEAGQALMIIDRVETLLGTVQMNTLELHTWNATAKDFDTPDRLILDLDP
DPALPWKAMLEATQLTLALLDELGLQSFLKTSGGKGMHIVVPLTRRAGWDEVKAFSQAMV
QHLAGLFPERLSAVSGPKNRVGRIFIDYLRNGKGATTVCAYSLRARAGLPVSVPIRREEL
TELEGANQWNLLNLGKRLVEGDDPWADYGRVRQSISKDLRRRMGVES
NT seq
2484 nt
NT seq
+upstream
nt +downstream
nt
atggccaagccgttgcaggagtacgcacgcaagcgcaatttcgacgccaccccggagcct
gtgggtagccatgcccagggcaaaaaagccgcccacgccctgcagtactgcatccagaaa
caccacgccagccacctgcactacgactttcgcctggaactggacggcaccctgaaaagc
tgggccatccccaagggcccgtcgctggacccgaaaatccggcgcctggcggtgcacgtt
gaagaccacccactggactacgccaacttcgaaggccgtatccccgaaggccattacggc
gccggtgaggtaatcgtctgggaccgcggtgtgtggattcccgaagaagacccgcgcaag
gcctatgccaaaggcaagctgcgctttcgcctgcagggcgagaagctgtccggcacctgg
aacctgtttcgcacccacctggccggcaccaaggagcagtggctgctggtcaagtccgac
gatgcccaggcgcgcccgcaagcagactacgacatcctcgaagcagagcccgacagcgtg
ctcagcgaacgcagcctgactgcccgccgccccagggcagcggcgaacaaaaccacccgc
aaggccaggcccgcgagcaagtccaagctcgacggcgccagcaaagccgctttgcccgct
tcgttcaaaccgcaattggcgaccctggtagagacgccccccgagggcgactggggctac
gaagtgaaattcgacggctaccgcatcctcgcccgcatcaacggtgagcaaatacgcctg
ttcacccgcaacggccatgactggaccgccaagttgcccagacaggccaaggccctggcc
gggctcggcgtgcaatcggcatggctcgatggcgagatggtggtggccaacgagcacggc
gttgcggattttcaggcgctgcagaatgccttcgatcaggcctgcgacgagcagatcgtt
tactacctgttcgacctgccgtacctcaacggcatggacttgcgccagtgcccgctggaa
cagcgccgctcggccctggccgcgctgctggagaaggccgacgacaagtgcctgcgtttc
tctgccggctttgaccagcgtgtcgaatcgctgctcgacagcgcctgcaagatgaagatg
gaaggcctgatcggcaagcgcctgggcagccactacgtcaaccgccgcagcagcgactgg
atcaagctcaagtgcaagcagcgccaggaattcgtgatcgtcggcttcaccgaccccaaa
ggctcgcgcgcagcgtttggcgcgctgctgctggccctgcacgatgagcgcggcgagctg
cgctatgccggcaaggtcggtaccggcttcaacagtgccacccttgcccacctgcatcaa
cgcctggcgccgcttgaagtcggcaagccgccattgcccacgccgccaaccggcgccgag
gccaaaggcgtgcactggctcaagccgcagctgctggccgaggtcgcctatgcgcagatg
acccgcgacggcgtggtgcgccattcggtgttccatggcctgcgtgacgacaaaccggcc
aaggccattggcctggagcagcccgtgaaaagcccggcaagcaacacgcccacactgcag
ctgacccacccgcaacgggtggtcgacgccagcaccggtatcaccaagcgccaggtcggc
gaatactacgcccaggtcgccgagtggatcctgccgcacctcaagcgccgcccggtggcc
ttggtgcgggcacccgacgggctggccggcgagctgttcttccagaagaacgccacaccg
ttgaacatccccggccttgagcgccacgacaaggccgaagccggtcaggcgctgatgatc
atcgaccgggtcgaaacactgctcggcacggtgcagatgaacaccctcgaactgcacacc
tggaacgccaccgccaaggactttgacacgcccgaccggctgattctcgacctcgacccg
gacccggcgctgccgtggaaggccatgctcgaagccactcaattgaccctggccctgctc
gatgaactgggcttgcagtcgttcctcaagaccagcggcggcaagggcatgcacattgtc
gtgccgctgacccggcgtgccggttgggacgaggtcaaggccttcagccaagccatggtc
cagcacctggccgggctgttccccgagcgcctgtcggcggtgtccgggccgaagaaccgg
gtcgggcggatcttcatcgactacctgcgcaacggcaaaggcgcgaccaccgtctgcgcc
tattcgctccgcgcccgcgcgggcctgccggtgtcggtgccgattcgccgcgaagagctg
actgagcttgaaggcgccaaccagtggaacctgctcaacctcggcaaacgcctggtcgaa
ggcgatgacccctgggccgattatggccgggtgcggcagtcgatcagcaaggacctgcgc
cgacgcatgggcgttgaatcatga
DBGET
integrated database retrieval system
