Paenibacillus dendritiformis: QJQ58_27145
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Entry
QJQ58_27145 CDS
T09074
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pdy
Paenibacillus dendritiformis
Pathway
pdy03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pdy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
QJQ58_27145 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pdy03400
]
QJQ58_27145 (ligD)
Enzymes [BR:
pdy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
QJQ58_27145 (ligD)
DNA repair and recombination proteins [BR:
pdy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
QJQ58_27145 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
Motif
Other DBs
NCBI-ProteinID:
WGU94133
LinkDB
All DBs
Position
complement(6094333..6095253)
Genome browser
AA seq
306 aa
AA seq
DB search
MASKEPPASLMVEGHEIQITNPNKLLWPEAGITKTDYIREMIRLSPYLLAACRDRFLTTI
RYPHGVPGEFFYQKNVPPGAPSFVETAMSGDIRYIVLQNVPTLLWLANLACIEFHPSLHR
IGDPLPAEWIIDLDPSVREEERIMEAAWIVGEAMERIGIRTIPKTSGATGVQLVVPIKRG
PTFMQLRELGEMLAIYLCELHPQLFTIERLKKNRGTRIYIDYMQHDASRTIAAPYTPRAT
PYASVSMPLTWDEVKRNPKPRDYHLLNAADRLAQVGDLIREAEPLAIEPILKAFSSQIQA
IRSRKG
NT seq
921 nt
NT seq
+upstream
nt +downstream
nt
atggccagcaaagaaccgcccgcgtccttaatggtggaagggcatgaaatccaaatcacg
aatccgaacaagctgttgtggccggaagcgggcataacgaagacggactatatccgggaa
atgatccggctgagcccttatttgctggcggcgtgccgcgaccgcttcctgacgacgatc
cggtatccgcatggcgttcccggggagtttttttaccagaaaaacgtgccgcctggcgcc
ccctccttcgtcgagacagcgatgtccggggatatccgctatatcgtgctccaaaatgtg
cctacgctgctgtggctggccaatctggcctgcatcgagttccatccttcgctgcaccgc
atcggcgacccgctcccggccgaatggattatcgacctggatccgtccgttcgggaggag
gagcggattatggaggccgcctggatcgtaggcgaagcgatggagcggatcggcatccgg
acgatcccgaagacgtccggcgccaccggcgtgcagctggtcgtgccgatcaagcgcggc
ccgaccttcatgcagctccgggagctgggcgagatgctcgccatctatctgtgcgagctt
cacccgcagctgttcacgatcgagcggctgaagaaaaaccggggcacccgcatttatatc
gattacatgcagcatgatgcctcccgaacgatcgcagcgccgtacacgccccgggctacg
ccgtatgcctcggtgtcgatgccgcttacttgggacgaggtgaagcgcaacccgaagccg
cgcgattaccatctgctgaatgccgccgatcggctcgcccaggtcggcgacctgatccgc
gaagccgagccgctggcgatcgagccgattctgaaggcattctccagccagattcaagcc
attcggtctcgaaaaggctaa
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