Phytobacter diazotrophicus: HHA33_19890
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Entry
HHA33_19890 CDS
T06586
Symbol
uvrB
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
pdz
Phytobacter diazotrophicus
Pathway
pdz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pdz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HHA33_19890 (uvrB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pdz03400
]
HHA33_19890 (uvrB)
DNA repair and recombination proteins [BR:
pdz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HHA33_19890 (uvrB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
HHA33_19890 (uvrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
UvrB
Helicase_C
ResIII
UVR
DEAD
SBDS_domain_II
UB2H
AAA_30
Helicase_C_2
DUF87
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QJF18675
LinkDB
All DBs
Position
complement(4179046..4181067)
Genome browser
AA seq
673 aa
AA seq
DB search
MSKPFKLNSAFRPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTVANVIADLQRPT
MVLAPNKTLAAQLYGEMKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIE
QMRLSATKALLERRDVIVVASVSAIYGLGDPDLYLKMMLHLTKGMIIDQRSILRRLAELQ
YTRNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGHVESTIQR
FTVYPKTHYVTPRERIVQAMEEIKVELADRRKVLLENNKLLEEQRLTQRTQFDLEMMNEL
GYCSGIENYSRYLSGRGPGEPPPTLFDYLPADGLLVIDESHVTIPQIGGMFRGDRARKET
LVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVIDQVVRPTGLLD
PIIEVRPVATQVDDLLSEIRIRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDI
DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG
RAARNVNGKAILYGDKITPSMAKAMGETERRREKQQQYNEEHGITPQGLNKKVVDILSLG
ESLAKTKGKGRGKSRTPAQVEAAELALTPKALQQKIHELEGQMMQHAQNLEFEEAAKCRD
QLHQLRELFIAAS
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaaccattcaaactgaattccgcttttcgtccctccggcgatcagccagaagct
attcgtcgcctggaagaagggctcgaagatggtctggctcatcagactttgctgggcgtg
accggttcagggaaaacgttcaccgtggcgaatgtcattgccgatttacagcgcccgacg
atggtgctggcgccgaacaagacccttgcggcacagttgtatggcgaaatgaaagagttc
ttcccggataacgcggtggaatatttcgtctcttactacgactactatcagccggaagcc
tatgtgccgagttcggacacgtttattgaaaaagatgcctcggtgaacgaacacattgag
cagatgcgactgtcggccactaaagcgctgcttgaacgtcgggatgtcattgtggtggca
tcggtctctgcgatttacggtctgggcgatccggacctgtacctgaagatgatgctgcac
ctgacaaaagggatgatcatcgatcaacgctccatactgcgtcggctggcggagctgcag
tatacccgcaatgatcaggcgtttcagcgcggcacctttcgcgtgcgcggcgaagtgatc
gatatcttcccggcagaatcggacgatattgccctgcgcgttgagctgtttgatgaagaa
gttgagcgtctgtcgctgtttgatccgctgaccgggcacgttgagtcgaccatccagcgt
tttacggtctatcccaaaactcactacgtcacgccgcgtgagcgcatcgttcaggcgatg
gaagagatcaaggtcgagctggccgaccggcgcaaagtgctgctggagaataataagctg
ctggaagaacagcggctgacccagcgcacccagtttgatctggaaatgatgaatgagttg
ggctattgctccggcatcgaaaactattcgcgctacctttccgggcgcgggccgggcgag
ccgccgccgacgctgtttgattaccttccggcggatggcctgctggtgattgatgaatcc
cacgtcaccattccgcaaattggcggtatgttccgcggcgaccgcgcgcgtaaagagacg
ctggtggagtacggtttccgtctgccgtcagcgctggataaccgcccactgaaattcgaa
gagttcgaagcgctggcaccgcaaaccatttatgtatcggcgacgccgggcaactatgag
ctggaaaaatccggtggcgatgtgattgaccaggttgtgcgcccgaccggcttgctcgat
ccgattatcgaagtgcgaccagtggcaacccaggtggacgatctgctctctgagatccgc
atacgcgctgccattaacgagcgcgtgctggtcacgacactgaccaaacgcatggcggaa
gatctgaccgaatatctcgaagaacacggtgagcgggtgcgttacctgcactccgacatc
gatacagtcgaacgtatggagattatccgcgatttacgccttggcgagttcgatgtgctg
gtgggcatcaacttgttacgtgaggggctggatatgccggaagtgtcgctggtggcaatt
ctggatgcggataaagaagggttcctgcgttctgagcgttcgctgattcagaccattggt
cgtgcggcgcgtaacgtcaacgggaaggccattctctacggcgataaaattaccccatcc
atggcgaaggcgatgggggaaaccgagcgtcgtcgcgagaaacagcagcagtacaacgaa
gaacacggcatcaccccgcaggggttgaacaaaaaagtggtggatattctgagcctcggc
gaaagcctggcgaagaccaaaggcaaaggtcgcggtaaatcgcgcacaccggctcaggtg
gaagctgccgaactggcattaaccccgaaagcgctgcagcagaaaattcacgagctggaa
gggcagatgatgcaacatgcgcagaatctcgaattcgaagaggcggcgaaatgccgcgat
caactgcatcaactgcgggaattgtttattgccgcctcgtaa
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