Phycodurus eques (leafy seadragon): 133407571
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Entry
133407571 CDS
T09682
Symbol
upf3b
Name
(RefSeq) regulator of nonsense transcripts 3B
KO
K14328
regulator of nonsense transcripts 3
Organism
pee
Phycodurus eques (leafy seadragon)
Pathway
pee03013
Nucleocytoplasmic transport
pee03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pee00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
133407571 (upf3b)
03015 mRNA surveillance pathway
133407571 (upf3b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pee03019
]
133407571 (upf3b)
Messenger RNA biogenesis [BR:
pee03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
133407571 (upf3b)
mRNA cycle factors
P-body specific factors
133407571 (upf3b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_1
Motif
Other DBs
NCBI-GeneID:
133407571
NCBI-ProteinID:
XP_061541592
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Position
9:complement(11361366..11376364)
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AA seq
449 aa
AA seq
DB search
MKEDKENTRPRERRVEIMCEDSDRTEKSKEKKETMTKIVIRRLPPSLTKEELEEQLQPLP
EVDYLEFFSNDTSLYPHLFARAYINFKNQEDIVLFRDRFDGYVFIDNRGQEYPAIVEFAP
FQKTSKKRSKKKDTKCGTISDDPDYKKFLEYYTGDNEKFTSTPETLLEEIEARSKELVAK
KTTPLLDFLKNKQRIREEKKEERRRRELERKRLRDEERRKWREEERRKRKGAEKMRKLDK
MPENEKDQIKDEPKIKLLKKPDRGEDPDCDKIKEKLKKTERPGKEETRISEHKRRQNNDN
KEERAKKPDEEGCKEFREHDAKRELEKEHQQREKERMRRQERRRRRERHEGENIGRKWAE
EEGPAKKERERPPDKKRADNASESDKMEKTPKDNKKDDSAKRERLRNKDRPAIQLYQPGA
RSRNRPAGGGGDDTSSMDRKPETETKKNG
NT seq
1350 nt
NT seq
+upstream
nt +downstream
nt
atgaaggaagacaaggaaaatacccgacccagggagaggagggtggaaataatgtgcgag
gattcggataggacggagaagtcgaaggaaaagaaagagaccatgacaaagattgtgatc
agaaggctgccaccaagtcttactaaggaggagctggaggagcaactgcagcctcttccc
gaagtggactacctcgagttcttctccaatgacaccagcctctatcctcacctctttgcg
agggcctacatcaacttcaagaaccaagaggatattgtactgttcagggatcgcttcgac
ggctatgtgttcattgacaacagaggacaggagtaccctgccattgtggagtttgcacct
tttcaaaagacatccaagaaaagaagcaagaaaaaggataccaagtgtggcaccattagt
gacgatcctgattacaaaaagtttttggagtattacactggagacaatgagaagttcaca
tccacacctgagactctgctggaagagattgaagccaggtcgaaggagctagtcgctaaa
aaaacaactcctctgctggattttctgaagaataaacagagaatcagagaggagaagaaa
gaggagagaaggcggcgggagctggaacgaaagcgccttcgtgacgaggaacgccgcaag
tggcgcgaggaggagcgacgtaagcgcaaaggagctgagaagatgaggaaactggacaaa
atgccagagaatgagaaggaccaaatcaaagatgagccaaaaataaaactgctgaagaag
ccagacagaggagaagatcctgactgtgacaaaattaaggagaagttaaaaaaaactgag
aggcctggcaaagaggaaaccagaatctctgagcacaagagacgacaaaacaatgacaac
aaggaggagcgtgcaaagaaaccggacgaggaaggctgcaaggagttcagggagcatgac
gccaagcgcgagctggagaaggagcatcaacagagagagaaagaacgcatgaggcggcag
gagcgacgcaggaggagggagaggcacgaaggcgagaacatcggtaggaagtgggcggag
gaggaggggccggcgaagaaggagagggagcggccaccggacaagaaacgggctgacaac
gcgtcagaatctgacaagatggagaagacgcccaaagacaacaagaaggacgacagtgcc
aaacgagaacggctacggaataaagatcgtcctgctatccagctgtaccagcctggagca
agaagccgcaatcgcccagcaggaggaggaggtgacgataccagctcgatggacaggaag
ccagaaaccgaaacaaagaaaaatggctga
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