Syntrophotalea acetylenivorans: A7E78_03755
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Entry
A7E78_03755 CDS
T04594
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pef
Syntrophotalea acetylenivorans
Pathway
pef03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pef00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A7E78_03755
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pef03019
]
A7E78_03755
03009 Ribosome biogenesis [BR:
pef03009
]
A7E78_03755
Enzymes [BR:
pef01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
A7E78_03755
Messenger RNA biogenesis [BR:
pef03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
A7E78_03755
Ribosome biogenesis [BR:
pef03009
]
Prokaryotic type
rRNA helicases
A7E78_03755
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_19
UvrA_inter
AAA_22
Motif
Other DBs
NCBI-ProteinID:
APG27023
UniProt:
A0A1L3GM65
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All DBs
Position
complement(832572..834335)
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AA seq
587 aa
AA seq
DB search
MTEETQTTISFSDLSLAPEIKRVIDEVGYETPSPIQARSIPPLLEGRDLLGQAQTGTGKT
AAFALPLLSRLDLSARYPQVLVLTPTRELALQVAEAVQTYARHLKGFHVLPVYGGQNMGQ
QLRQLQRGTHVVVGTPGRIQDHLRRGTLKLDRLSCVVVDEADEMLKMGFIDDVEQILQHA
PQERQTALFSATMPKEVLKIARRHLQDPVEIRIKSKTSTVATISQRYWQVKGLAKLDALT
RILEAEDIDAMIIFVRTKIATVELAEKLEARGFSSAALNGDMTQALREKTVDRLKSGGLD
IVVATDVAARGLDVQRISHVVNYDIPYDTESYIHRIGRTGRAGREGSAILFVAPRERRML
AAIEQATRQKIAPMKLPTRKDITERRVGLFKEQILAVMKSEDLTFFEELIDGCQQEYEVE
PRRIAAAMAYLLQQDRPLMPEEETYVEPPSQSAPRVSAGKRGSADEGLRRYRIEVGKVHG
VVPGHIVGAIANEANISNRDIGQIKIFHDFSLVDLPANMPSATFHLLQKVWVCGQHLQLS
VDAGVERQGKPPKRRPAGKSGGGYKGNKPVKKHPSAAKRASKKARQT
NT seq
1764 nt
NT seq
+upstream
nt +downstream
nt
atgactgaagaaacacaaacaactatcagcttttccgatctttctcttgcccccgaaatt
aagcgagtgattgatgaggtcggttacgaaactccttctcccatacaggcgcgcagtatt
cctccgttgcttgaagggcgggatctgcttggacaggcccagaccggtaccggtaagact
gcggccttcgccctgccgttgctgagtcggcttgatctatctgccagatatccgcaggtg
ttggtgttgacacccacccgtgagttggcgctgcaagtcgccgaagcggtgcagacctat
gcccgccatctgaaaggttttcacgtcttgccggtgtacggcggtcagaatatgggccag
caacttcgtcagctgcagcgaggcacgcatgtagtcgtcggcacccctgggcgtattcag
gaccacttgcgccgagggactctcaagctggatcgcctctcgtgcgtcgtggtggacgaa
gcggacgagatgctcaaaatgggtttcatcgacgatgtcgagcagattctgcaacatgcc
ccccaagaacgtcagacggctctattttcagccaccatgcctaaagaagtactgaaaatt
gcccgacgccatttgcaggaccccgttgagatccgtatcaagagtaaaacgtctaccgtg
gctacgatcagccagcgatactggcaggtcaaaggtctggccaagctcgatgcgttaacc
cggattttggaagccgaagatatcgatgcgatgatcattttcgtccggaccaagatcgct
acggttgagcttgctgaaaaactggaagctcgggggttttccagtgcagcgcttaatggc
gacatgacccaggctttacgggaaaaaaccgttgatcgattgaagagcggggggcttgat
atcgtggtggccaccgatgtggcggctcgaggcctggatgttcagcgcatcagtcacgtg
gtaaactacgatatcccctacgataccgagtcttatattcatcgtatcgggcgcaccggc
cgggcaggacgtgaaggctctgcaattctgtttgtggctccgcgagagcgtcgcatgttg
gccgctattgagcaggcgacccggcagaagattgccccgatgaagttgccgacccgtaaa
gatataaccgaacgtcgcgtcggcctgttcaaggaacagattcttgctgtcatgaagagt
gaggatctgaccttctttgaagaattaatcgatggatgccagcaggaatatgaggttgaa
ccgcgccgaattgctgccgctatggcttatctgctgcagcaggatcgtccgctgatgccc
gaagaggagacctatgtggagcctccttctcaatccgctccccgggtttctgcaggcaag
cgcggttctgccgatgaggggctgcgacgctatcgcatcgaggtcggaaaagtgcacggt
gttgtgcccggtcatatcgtcggggcgattgccaacgaggcgaatatcagcaaccgcgat
atcggccagataaaaatcttccacgatttcagtctggtcgatttgccagcaaatatgccg
tctgccacgttccaccttctgcaaaaggtgtgggtctgcggacagcatctgcaactgagt
gtcgatgccggtgtagagcgccagggaaagccgcccaaacgtcgccctgcaggaaaatcc
ggaggtggatacaagggaaataagccggttaagaagcacccctccgcagccaagcgtgcc
tctaaaaaagcacgccagacttga
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