KEGG   Syntrophotalea acetylenivorans: A7E78_14125
Entry
A7E78_14125       CDS       T04594                                 
Name
(GenBank) DNA ligase (NAD(+)) LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
pef  Syntrophotalea acetylenivorans
Pathway
pef03030  DNA replication
pef03410  Base excision repair
pef03420  Nucleotide excision repair
pef03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:pef00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    A7E78_14125
   03410 Base excision repair
    A7E78_14125
   03420 Nucleotide excision repair
    A7E78_14125
   03430 Mismatch repair
    A7E78_14125
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pef03032]
    A7E78_14125
   03400 DNA repair and recombination proteins [BR:pef03400]
    A7E78_14125
Enzymes [BR:pef01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     A7E78_14125
DNA replication proteins [BR:pef03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     A7E78_14125
DNA repair and recombination proteins [BR:pef03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     A7E78_14125
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     A7E78_14125
   MMR (mismatch excision repair)
    DNA ligase
     A7E78_14125
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      A7E78_14125
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 HHH_5 BRCT DNA_ligase_ZBD PTCB-BRCT HHH RNA_pol_A_CTD RapA_C
Other DBs
NCBI-ProteinID: APG28868
UniProt: A0A1L3GT73
LinkDB
Position
complement(3107704..3109728)
AA seq 674 aa
MDQTQAAKRHRQLCAELHRHNTLYHIHDRPEIGDAEYDRLFSELLQLEEAFPELDTPSSP
SRRVGAPPLEKFKSVAHSLPMLSLENAFNDQDMRDFDERIKRFLSTDETIEYACELKMDG
VAVELVYHEGRLEVGSTRGDGSSGEGITENLRTIASIPLLLSEDAPSLLEVRGEVYMELA
AFQSLNEERQEEGLANFANPRNAAAGSLRQLDSAITARRPLQIFCYGIGLLEGPRPHSHS
QLLEQLRTWGLRVNSEETKTAKGIDQVLAIYANLLQRRDQLPYEIDGMVVKVNNLALQRE
LGEKTRTPRWAIAYKFPPRQAITTIDDIVLQVGRTGAITPVAQLRPVEVSGVIVSRASLH
NWDEIARLDVRIGDQVVVERAGDVIPDVVKVLTEKRSGDEQALPLPLNCPVCSGPVSRLE
GEVVPRCQNSSCPARLRESLKHFVARRAMDIDGLGQRTIDQLLERGLVRNFADLYRLSRE
ELLACERMGEKSTDKLLAAIDASKERPLARFLFALGIRNVGEHLAKLLAAQFGTLAELAT
AGHDQLLALHEVGPQVAESVVDFFANERNRQLLAELQEAGVRPQAGEKRSGGPLTGKTFV
FTGSLEIFKRKEAQQLVEGRGGRASGSVSKKTDYLVAGRDAGSKLDRANELGVTVLSEEE
FQQLLARIDNGEQH
NT seq 2025 nt   +upstreamnt  +downstreamnt
atggatcagactcaggcggcgaaacgacatcgacaactctgtgcggaactgcaccgccac
aacaccctgtatcatattcatgatcggccggaaatcggcgatgccgaatacgaccgactt
ttcagcgaactgctccagctcgaggaggccttccctgaactggacactccgtcctcccct
tcccgccgggtcggtgcaccacccctggagaaattcaaatcggtggctcacagcctgccg
atgttgtccctggagaatgcttttaacgaccaggatatgcgcgatttcgacgaacgcatc
aagcgcttcctgtctaccgacgaaaccatcgaatacgcctgtgaactcaagatggacggc
gtcgcggttgaactagtctaccacgagggccgactggaggtcggctctacccgcggcgat
ggcagcagcggcgaaggaatcaccgaaaatctgcgcaccatcgcctcaatccccctgctt
ctttctgaggacgcaccctcactgctggaagtaagaggcgaagtctacatggagctcgcg
gcctttcagtcccttaacgaagagcgacaggaggagggcctggctaatttcgccaatcct
cgaaacgccgccgccggcagcctgcgtcaactggactcggcgattaccgcccgccgcccc
ctgcagatcttctgctatggaatcggcctgctcgaaggaccccgtccccacagccactca
caactgctggagcaactccgcacatggggtctacgagtcaattcagaagagactaagacc
gccaaggggatcgatcaggtacttgcgatctatgccaatctgctccaaagacgggaccag
ctcccctacgaaatcgacggcatggtggtcaaggtcaacaatctggccctgcaacgggag
ttgggggaaaagacccgaacgccgcgctgggccatcgcttacaagtttccgccacgccag
gcaatcaccactatcgacgacattgtgctgcaagtcggccgtaccggcgccatcaccccg
gtggcccagttacgaccggtggaggtcagcggagtgatcgtctcccgcgccagtctgcac
aattgggacgaaatcgcccgtctcgacgtacgaatcggtgatcaggtggtggtggaacga
gccggcgacgtcattcccgacgtggtgaaggtattgaccgaaaaacgcagcggcgatgaa
caagccctgcccctgccgctcaattgccccgtttgcagcggcccggtcagccgccttgaa
ggcgaggtcgtgccccgttgccagaacagttcctgtccggcccgcctgcgggaatccctc
aaacacttcgttgcccggcgagccatggacatcgacggcctcggtcaacgtaccatcgac
caactattagaacgcggcctggtgcggaattttgccgatctctaccgcctgagcagagaa
gagctgctggcatgcgaacgaatgggcgaaaaatcgacggacaaactgctggccgccatc
gacgccagcaaggagaggcccctggcacgtttcctgttcgccctcggcattcgcaacgtc
ggtgagcatctggccaagctgctggccgcacaattcggcaccctggcagaactggccact
gccggtcacgaccaactgctggccttgcacgaagtgggtccgcaggtcgccgagagcgta
gtggactttttcgccaacgaacgcaaccggcaactcctggccgaattgcaggaggctggc
gtacggccccaggctggagaaaagcgcagcggcggaccattgaccggcaagactttcgtc
ttcaccggcagcctggagatcttcaaacgcaaggaagcacaacagttggtcgaaggccgc
ggcggccgcgcttccggttcagtgagcaaaaaaaccgactacctggtggccggccgggac
gccgggagcaaacttgatcgagccaacgagttgggggtgacagtgctcagcgaagaggaa
tttcagcaattgctggcaaggatcgataacggtgaacagcattag

DBGET integrated database retrieval system