Syntrophotalea acetylenivorans: A7E78_14125
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Entry
A7E78_14125 CDS
T04594
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pef
Syntrophotalea acetylenivorans
Pathway
pef03030
DNA replication
pef03410
Base excision repair
pef03420
Nucleotide excision repair
pef03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pef00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
A7E78_14125
03410 Base excision repair
A7E78_14125
03420 Nucleotide excision repair
A7E78_14125
03430 Mismatch repair
A7E78_14125
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pef03032
]
A7E78_14125
03400 DNA repair and recombination proteins [BR:
pef03400
]
A7E78_14125
Enzymes [BR:
pef01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
A7E78_14125
DNA replication proteins [BR:
pef03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
A7E78_14125
DNA repair and recombination proteins [BR:
pef03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
A7E78_14125
NER (nucleotide excision repair)
GGR (global genome repair) factors
A7E78_14125
MMR (mismatch excision repair)
DNA ligase
A7E78_14125
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
A7E78_14125
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH
RNA_pol_A_CTD
RapA_C
Motif
Other DBs
NCBI-ProteinID:
APG28868
UniProt:
A0A1L3GT73
LinkDB
All DBs
Position
complement(3107704..3109728)
Genome browser
AA seq
674 aa
AA seq
DB search
MDQTQAAKRHRQLCAELHRHNTLYHIHDRPEIGDAEYDRLFSELLQLEEAFPELDTPSSP
SRRVGAPPLEKFKSVAHSLPMLSLENAFNDQDMRDFDERIKRFLSTDETIEYACELKMDG
VAVELVYHEGRLEVGSTRGDGSSGEGITENLRTIASIPLLLSEDAPSLLEVRGEVYMELA
AFQSLNEERQEEGLANFANPRNAAAGSLRQLDSAITARRPLQIFCYGIGLLEGPRPHSHS
QLLEQLRTWGLRVNSEETKTAKGIDQVLAIYANLLQRRDQLPYEIDGMVVKVNNLALQRE
LGEKTRTPRWAIAYKFPPRQAITTIDDIVLQVGRTGAITPVAQLRPVEVSGVIVSRASLH
NWDEIARLDVRIGDQVVVERAGDVIPDVVKVLTEKRSGDEQALPLPLNCPVCSGPVSRLE
GEVVPRCQNSSCPARLRESLKHFVARRAMDIDGLGQRTIDQLLERGLVRNFADLYRLSRE
ELLACERMGEKSTDKLLAAIDASKERPLARFLFALGIRNVGEHLAKLLAAQFGTLAELAT
AGHDQLLALHEVGPQVAESVVDFFANERNRQLLAELQEAGVRPQAGEKRSGGPLTGKTFV
FTGSLEIFKRKEAQQLVEGRGGRASGSVSKKTDYLVAGRDAGSKLDRANELGVTVLSEEE
FQQLLARIDNGEQH
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
atggatcagactcaggcggcgaaacgacatcgacaactctgtgcggaactgcaccgccac
aacaccctgtatcatattcatgatcggccggaaatcggcgatgccgaatacgaccgactt
ttcagcgaactgctccagctcgaggaggccttccctgaactggacactccgtcctcccct
tcccgccgggtcggtgcaccacccctggagaaattcaaatcggtggctcacagcctgccg
atgttgtccctggagaatgcttttaacgaccaggatatgcgcgatttcgacgaacgcatc
aagcgcttcctgtctaccgacgaaaccatcgaatacgcctgtgaactcaagatggacggc
gtcgcggttgaactagtctaccacgagggccgactggaggtcggctctacccgcggcgat
ggcagcagcggcgaaggaatcaccgaaaatctgcgcaccatcgcctcaatccccctgctt
ctttctgaggacgcaccctcactgctggaagtaagaggcgaagtctacatggagctcgcg
gcctttcagtcccttaacgaagagcgacaggaggagggcctggctaatttcgccaatcct
cgaaacgccgccgccggcagcctgcgtcaactggactcggcgattaccgcccgccgcccc
ctgcagatcttctgctatggaatcggcctgctcgaaggaccccgtccccacagccactca
caactgctggagcaactccgcacatggggtctacgagtcaattcagaagagactaagacc
gccaaggggatcgatcaggtacttgcgatctatgccaatctgctccaaagacgggaccag
ctcccctacgaaatcgacggcatggtggtcaaggtcaacaatctggccctgcaacgggag
ttgggggaaaagacccgaacgccgcgctgggccatcgcttacaagtttccgccacgccag
gcaatcaccactatcgacgacattgtgctgcaagtcggccgtaccggcgccatcaccccg
gtggcccagttacgaccggtggaggtcagcggagtgatcgtctcccgcgccagtctgcac
aattgggacgaaatcgcccgtctcgacgtacgaatcggtgatcaggtggtggtggaacga
gccggcgacgtcattcccgacgtggtgaaggtattgaccgaaaaacgcagcggcgatgaa
caagccctgcccctgccgctcaattgccccgtttgcagcggcccggtcagccgccttgaa
ggcgaggtcgtgccccgttgccagaacagttcctgtccggcccgcctgcgggaatccctc
aaacacttcgttgcccggcgagccatggacatcgacggcctcggtcaacgtaccatcgac
caactattagaacgcggcctggtgcggaattttgccgatctctaccgcctgagcagagaa
gagctgctggcatgcgaacgaatgggcgaaaaatcgacggacaaactgctggccgccatc
gacgccagcaaggagaggcccctggcacgtttcctgttcgccctcggcattcgcaacgtc
ggtgagcatctggccaagctgctggccgcacaattcggcaccctggcagaactggccact
gccggtcacgaccaactgctggccttgcacgaagtgggtccgcaggtcgccgagagcgta
gtggactttttcgccaacgaacgcaaccggcaactcctggccgaattgcaggaggctggc
gtacggccccaggctggagaaaagcgcagcggcggaccattgaccggcaagactttcgtc
ttcaccggcagcctggagatcttcaaacgcaaggaagcacaacagttggtcgaaggccgc
ggcggccgcgcttccggttcagtgagcaaaaaaaccgactacctggtggccggccgggac
gccgggagcaaacttgatcgagccaacgagttgggggtgacagtgctcagcgaagaggaa
tttcagcaattgctggcaaggatcgataacggtgaacagcattag
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