Pedobacter aquae: FYC62_12405
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Entry
FYC62_12405 CDS
T06312
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pej
Pedobacter aquae
Pathway
pej03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pej00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FYC62_12405 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pej03400
]
FYC62_12405 (mfd)
Enzymes [BR:
pej01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FYC62_12405 (mfd)
DNA repair and recombination proteins [BR:
pej03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
FYC62_12405 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
PPO1_DWL
Motif
Other DBs
NCBI-ProteinID:
QEK52362
UniProt:
A0A5C0VKH7
LinkDB
All DBs
Position
2826802..2830152
Genome browser
AA seq
1116 aa
AA seq
DB search
MNIREILERYKQDNRVEQLTQALQQKKSRVHLKGLIGAQDAFIVAANYFLTHRNMVFVLP
DREEANYFQADLENLMDKDILLFPSSYRKSFDFTQTDSANVLLRAEVLNELNHTHEYGNL
IVTYPEALAEKVIDRNALEKNTLEIILNNKLSIDFINEFLIEYDFERTDFVYEPGQFSVR
GGIVDIFSFSNELPYRIEFFGDHVESIRTFEIESQLSVEQVKSVTIVPNVQAKFLTESNI
SLLEFIDDDAAIWFKDVVFTLDTIKTGYKKATELWKALSANDKQTNPDWLDPKFSFTDEK
LLADQLSDFPLIEFGKQFFYPATQTILFDTKPQPSFNKDFNLLIHNLKENEKQKIENFIL
TDSSKQQERLFAIIEDLGKQITFTPINISIREGFIDYEQKLACYTDHQIFDRYYKYKLKR
GYTKSQAITLKELRDLKPGDFITHIDHGVGKYGGLEKVEVNGKIQEMIRLIYADNDLLYV
NINSLNRISKYSGKDGHIPKMNKLGTDAWDKLKKTTKKKVKDIARDLIKLYALRKAQEGM
AFSPDTYLQNELEASFIYEDTPDQEKATADVKKDMESPHPMDRLVCGDVGFGKTEVAIRA
AFKAATDGKQVAILVPTTILAMQHYKTFNERLKDFPVRIDYINRFKSTKQVKDTLEALKA
GKVDIIIGTHKLVSKDVKFKDLGLLIIDEEQKFGVTVKEKLKQFRANVDTLTLTATPIPR
TLHFSLMGARDLSIIQTPPPNRQPVLTELHVFNEKLIKEAVEFELDRDGQVFFIHNRVAD
LRQLGGLIQKLVPKARIAIAHGQLEGDKLEDIMLDFIEGKYDVLVATTIIEAGLDVPNAN
TMLINHAHMFGLSDLHQMRGRVGRSNKKAFCYLLSPPLSTLTPEARKRLSAIEEFSDLGS
GFNVAMRDLDIRGSGNLLGAEQSGFIAEIGFDMYHKILDEAIQELKEEEFKGLFQDEKPR
PFVSFTQIETDMELLIPDEYVTNIQERYNLYTELSKMENKTALDAFEKELHDRFGPLPRQ
VKDLLRTVELQWIGKEIGLEKISWKKGTLRGYFITDKQSKYFETDMFGSILQYAQQHPRK
VNLKEVKNTLRIAVEDIKNIDEAIWALEQMRDPVVI
NT seq
3351 nt
NT seq
+upstream
nt +downstream
nt
gtgaacatcagagagattttagaaagatataagcaagataaccgggttgagcaattaacc
caggccttacagcaaaagaaatcgcgtgtacatttaaagggtttaattggtgctcaagat
gcttttattgtggccgccaattattttcttacccatagaaatatggtttttgtactgcca
gacagagaagaagctaattattttcaggccgatttagagaaccttatggataaagatatt
ctgctttttccatcgtcttaccgcaaatcttttgattttacccaaacagattctgccaat
gtacttttaagagctgaagtattgaacgagcttaaccatacacatgagtatggaaattta
attgttacctacccagaagcattagcagaaaaagttattgatagaaacgcacttgaaaaa
aacacgcttgaaattatcttaaacaacaaactcagcattgattttatcaacgagttttta
attgaatatgattttgaacgtaccgattttgtatatgaaccaggacagttctcggttcgt
ggaggtattgtagatatattttctttctctaacgagttaccttatcggatagagtttttt
ggcgaccatgtagaatctatcagaacgtttgaaatagaaagtcagctttctgtagagcaa
gtaaaatctgttaccatagttccaaacgtacaagctaaatttcttacagaaagcaatatc
tctttattagaatttattgatgacgatgcagctatttggtttaaagatgtggttttcact
ttagataccatcaaaaccggatacaaaaaagctacagaactttggaaagctttatcagca
aatgataagcaaactaacccagactggctagacccaaagttttcttttacggatgaaaaa
ctactggcagaccaactgagcgattttcctctgatagaatttgggaagcagtttttttat
ccggcaacgcaaacaatcttgtttgatactaagcctcaaccttcttttaataaagatttt
aatctgcttatccacaacctaaaagaaaacgaaaagcaaaaaatagagaattttatccta
acagattcttctaaacaacaagaacgtttatttgccattatagaagatttaggcaagcaa
attacctttacgcctatcaatatatctatcagagaaggttttatagattacgagcaaaaa
ctggcttgttatacagaccatcagatatttgaccgttactataaatacaagcttaaaaga
ggctatactaaatctcaagccatcacccttaaagaacttagagatttaaaacccggagat
tttatcacccatatagaccatggtgttggtaaatacggtggcttagaaaaggttgaagta
aacggtaaaatacaggaaatgattaggcttatttatgccgataatgatttgctgtatgta
aacatcaactctttaaaccgcatttctaaatattctggtaaagatgggcacattcctaaa
atgaataaattaggaaccgatgcttgggataaactcaagaaaacaacaaaaaaaaaagtt
aaagacattgcccgcgacttgataaaactttatgccctgcgtaaagcacaagaaggtatg
gctttctcgcccgatacttatttacaaaacgaactggaagcttcttttatttatgaagat
accccagatcaagaaaaggctaccgccgatgtgaaaaaagacatggaatcgccacaccca
atggaccgtttagtttgtggcgatgttggctttggaaaaacagaagtagctatcagagca
gcttttaaagccgctacagatggtaaacaggttgctattttggtacctacaaccattttg
gctatgcaacattacaaaacctttaatgagcgtttaaaagatttcccggtaaggatagat
tatatcaaccgatttaaatctaccaagcaagtaaaagatactttagaagccttaaaagcc
ggaaaagtagatatcattattggcacccataaattggtgagtaaagatgttaagtttaaa
gatttaggccttttaattatagatgaggagcaaaaatttggtgttaccgttaaagaaaaa
ttaaagcagtttagagccaatgtagatacgcttacgctaactgcaacgccaattccgcgt
actttgcatttttctttgatgggtgctcgggatttatctatcatccaaacgccaccacca
aaccgccaacctgttttaacagagctacatgtttttaatgagaaattgattaaagaagct
gtagagtttgagttagatagagatgggcaggttttctttatccataaccgtgttgcagat
ttacgtcagctaggtggtttaatacaaaagctggttccaaaagcaagaatagctattgca
catggtcagttagaaggcgataagcttgaagatatcatgcttgattttattgaaggaaag
tatgatgttttagttgctactaccattattgaggctggtcttgatgtaccaaatgccaat
accatgttgattaaccatgcacacatgtttggtttaagcgatttacatcagatgcgtggg
cgtgttggccgctctaacaaaaaggcgttttgttatttgttaagtccgcctttgtctacc
cttacgccagaagccagaaagcgtttaagcgccatagaagagttttctgatttaggtagc
ggatttaacgtggctatgcgagatttagacatccgcggaagcggaaaccttttaggtgca
gagcaaagtggttttattgccgaaattggctttgatatgtaccacaaaatcttggatgaa
gctatacaagaacttaaagaagaagagtttaaaggtttatttcaggatgaaaaacctcgt
ccttttgtaagctttacccaaatagaaaccgatatggaactgcttattcctgatgagtat
gtaaccaatatccaagaacgttataatttatataccgagctttctaaaatggagaataaa
acagctttagatgcttttgaaaaagaacttcatgaccgttttggaccactaccaagacaa
gtgaaagacctactcagaacggtagaattacaatggattggaaaagaaataggcttagaa
aaaatcagctggaaaaaaggaactttaaggggttattttattaccgataaacaatctaaa
tattttgaaaccgatatgtttggtagtatcctacaatatgcgcaacagcatccacgtaaa
gtaaacctgaaagaggttaaaaacaccttgcgtattgctgttgaagacatcaaaaatatt
gatgaagccatttgggcactagagcaaatgagagacccggtagtgatctag
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