Pedobacter sp. KBS0701: FFJ24_006755
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Entry
FFJ24_006755 CDS
T06361
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pek
Pedobacter sp. KBS0701
Pathway
pek03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pek00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
FFJ24_006755 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pek03400
]
FFJ24_006755 (ligD)
Enzymes [BR:
pek01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
FFJ24_006755 (ligD)
DNA repair and recombination proteins [BR:
pek03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
FFJ24_006755 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
mRNA_cap_enzyme
RNA_ligase
GH3
HSP70
Motif
Other DBs
NCBI-ProteinID:
QDW24531
LinkDB
All DBs
Position
1722910..1725606
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AA seq
898 aa
AA seq
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MSLEKYVAKRDFSKTAEPKSGESSDPNKLHFVIQKHDASRLHYDFRLEMEGVLKSWAVPK
GPSTDPKTKRLAMMVEDHPYDYKDFEGIIPQGEYGGGTVIVWDEGTYEPIEAIKGKKAQE
KHLLKQLKEGSLKIKLNGEKLQGEFALVKTHGMGENGWLLIKHKDDYASTKDITKEDKSV
LSGKTIEKMEKTSDKVWKEGKEQKIKPERKNPGPKVKKQTKPVGDDKSIDVKAILKKAPK
SAMPKNIKPMLATLVDEPFDDPNWQYEVKWDGYRALAFINKGKVELFSRNNKSFNEKFYP
IYDLLKEWKINAVLDGEILVLNDKGISNFGSLQNWRSEADGELVFYVFDILWYEGKNLME
MPLNERQAILNDILSTDDDRVRLGKVFKASGVDFFDAAQRMGLEGIIAKKMDSTYAPDRR
SKEWLKIKVHKRQEVVIAGFTKNADTSKSFSSLLLGLYEKGKLQYVGKVGTGFSDKLQKT
MMEQFKPIIIDKSPFESIPDVNKPSRFRPNPPKAKATWLKPQLVCEVAFTEVTEDGVFRH
PSFQGMREDKKAKEVVREEEKPTQKVVGKVKEKEEHAHAIKPPKGKEPKTLLNPKDETQV
RKIKGHELKFTNLSKVYWPEDKVTKRDMFNYYYQVADYILPYLKDRPQSLNRFPGGIHGP
SFYQKDVKGKAPDWTETFPYENGEGEKKEYLVGTDEASLLWMASLGCIEMNPWFSRVQHP
DNPDYCVIDLDPDKHSFDQVVEAALETKKVLDAIEVPSYCKTSGSTGMHIYIPLNAKYDY
DQSQMFAKIVVNLVHKQIPDYTSLERMVAARKGKMYLDFLQNRPGATIAGPYSLRPKVGA
TVSMPLHWDEVKPGLKMKDFNIFNAIDRLKVEGDLFKGVLGKGIDLKKAINKAQSVFG
NT seq
2697 nt
NT seq
+upstream
nt +downstream
nt
atgagtctggaaaaatatgttgccaagcgcgatttctcaaaaacggcagagcccaaatca
ggtgaaagcagcgatccgaacaagttgcactttgtgatccaaaagcatgatgcatcacgc
ctgcactatgatttcagacttgaaatggaaggcgttttaaaaagctgggccgtaccaaaa
ggtccgtcaaccgatcccaaaaccaaacgtttggccatgatggtagaagaccatccttac
gattataaagattttgaaggcattattccgcaaggcgaatatggtggtggaactgtaatt
gtatgggatgaaggtacctacgaaccaattgaggctataaaaggcaaaaaagcacaggaa
aagcatcttttaaaacagttaaaagaaggttcgttaaaaattaaattgaacggagaaaaa
cttcagggcgaatttgcgctggttaaaacgcatgggatgggcgaaaatggctggctgctc
attaaacataaagatgattatgcctccacaaaagatataaccaaagaagataaatcggtt
ctttcaggaaaaactatcgaaaagatggaaaaaacatcagataaggtttggaaagaagga
aaagagcaaaaaataaagcccgaaagaaaaaatcccgggccgaaggttaaaaaacaaaca
aaaccagtaggggatgataaaagcattgatgtgaaagccatcctgaaaaaagcgccaaaa
tcggctatgcctaaaaacataaaacccatgttggctacgttggtggatgagccattcgat
gatccaaactggcaatacgaagtaaaatgggatggataccgggctttggcttttatcaac
aaaggaaaagtggagctcttttcgaggaacaataaatcatttaacgaaaagttttatcct
atttacgatctgcttaaagaatggaaaatcaatgccgttttggatggtgaaattttagtg
ttaaatgataaaggcatatccaatttcggttcattacaaaactggcgaagtgaggcagat
ggtgaacttgttttttatgttttcgatatcctttggtatgagggcaaaaacctgatggaa
atgccgcttaatgaacgccaggccattttaaatgatattttgtctacagatgatgaccgt
gtgcgtttaggtaaagttttcaaagccagtggtgtcgatttttttgatgccgcacaaagg
atggggttggaaggcatcatcgctaaaaaaatggatagcacctacgctcccgaccgaaga
tcgaaagagtggttgaaaattaaagtgcacaaacgccaggaggttgttatagccggtttt
accaaaaatgccgatacctccaaatctttcagctcccttttactgggcttatatgaaaaa
ggaaaattgcagtatgtaggtaaagttggtaccgggttttccgataaactgcaaaaaaca
atgatggagcagtttaagcctattataatagataaaagcccttttgaaagtatccccgat
gtaaataaaccatcccgtttcagaccaaatccaccgaaggcaaaagccacctggttaaag
ccgcagttggtttgcgaagtcgcttttactgaagtaaccgaagatggtgttttccgtcac
ccttcctttcaggggatgagggaggataaaaaagcgaaagaagtggttcgggaagaggaa
aaacctactcaaaaggttgttggtaaggtgaaagaaaaagaggagcatgcccatgctatt
aaaccgcccaaaggaaaagaacccaaaaccttattaaaccctaaagatgaaacacaggta
agaaaaattaaaggccacgaacttaaatttaccaatttgagcaaagtgtattggccagag
gataaagtaaccaaaagggatatgtttaattactattaccaggttgctgattatatttta
ccttatcttaaagaccggccacaatcgcttaaccgtttccccggaggcatccacgggcca
agtttttaccaaaaagatgtaaaaggaaaggcaccagattggacagaaacttttccgtac
gaaaatggcgaaggggagaaaaaggaatacctggtaggtacggatgaggcttctttatta
tggatggccagtttgggctgtattgaaatgaacccttggtttagccgtgtgcaacaccct
gataatcctgattattgtgtcatcgatctcgatccggataaacactcttttgatcaggtg
gttgaagctgccctcgaaaccaaaaaagtgcttgatgcaattgaagtacccagttactgc
aaaacttcaggctcaacaggcatgcacatttacattcctttaaatgctaaatacgattac
gatcagagtcagatgttcgctaaaatcgttgtaaatctggtacataaacagattcctgac
tatacttcattagagcgaatggtagctgcaagaaaaggaaaaatgtatctcgactttttg
cagaacaggccaggggcgaccatcgccggaccatactctttacggccaaaagtgggggca
acggtttccatgcctttacattgggatgaagtaaaacctggtttgaagatgaaagatttc
aatatttttaatgcgatagatcgtttaaaagttgaaggagacttgtttaaaggggtttta
ggtaaaggtatagacttaaaaaaagccataaataaggcccaaagtgtttttggataa
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