Pedobacter sp. KBS0701: FFJ24_021875
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Entry
FFJ24_021875 CDS
T06361
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pek
Pedobacter sp. KBS0701
Pathway
pek03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pek00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FFJ24_021875 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pek03400
]
FFJ24_021875 (mfd)
Enzymes [BR:
pek01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FFJ24_021875 (mfd)
DNA repair and recombination proteins [BR:
pek03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
FFJ24_021875 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QDW27333
LinkDB
All DBs
Position
5396057..5399395
Genome browser
AA seq
1112 aa
AA seq
DB search
MNIRDLINRYKTDDRVTQFTKALNATRNPKIQLKGLVGSADAIVALSSYFLLHKPIMFVL
PDREEAAYFQSDLESVLDKQVLLFPSSYRKSFDFTQVDTANVLARAEVLNELNHDSEYGK
IVVSYPEAIAEKVIDRSALEKNTLEISLEAKLGIDFINEFLIDYDFDRRDFVYEPGQFSI
RGGIVDIFSFSSDLPYRIEFFGDEVESIRSFEIESQLSVADLKSLTIVPNVQAKFLTESN
ISILDYIDQDTQLWFKDVEFTLDIVKAGYKKAVELWKALPVADKTQNPEWIDPKFAFSDE
KLLGDHLQDFPLVEFGKQFFYKTDNRFEFKTKPQPSFNKDFNLLIHNLKENEKAGIVNFI
FTDSPKQIERLYAILEDIDKTAKFTPINSMLREGFVDPQIQTAFYTDHQIFDRYYKYKLK
KGYQKSQAITLKDLRELKSGDYVTHIDHGIGKYAGLEKVEVNGKTQEMIRLIYADNDLLY
VNINSLNRIAKYSGKESGVPKMNKLGTDAWDKLKKTTKKKVKDIARDLIKLYALRKTQAG
TAFSPDSYLQTELEASFIYEDTPDQLKATQDVKKDMESPHPMDRLVCGDVGFGKTEIAVR
AAFKAVAEGKQAAILVPTTILALQHFKTFSSRLKDFPVTVDYINRFKTSKQIKDTLAEAA
AGKVDILIGTHRLLSKDVKFKDLGIMIIDEEQKFGVTAKERLKAVRVNVDTLTLTATPIP
RTLHFSLMGARDLSIISTPPPNRQPVSTELHVFNDKLIQEAVQFELDRGGQVFFIHNRVN
DLMQLGGLIQKLVPKARIGIAHGQLDGDQLEDVMLDFINGEKDVLVATTIIEAGLDIPNA
NTIIINHAHMFGLSDLHQMRGRVGRSNKKAFCYLLSPPLSTLTSEARKRLSAIEEFSDLG
SGFNVAMRDLDIRGSGNLLGAEQSGFIAEIGFEMYHKILDEAIQELKEAEFKGLFENEPA
RPFVGFTQVDTDLELYIPDAYITNITERYNLYTELSKLDNEAELAIFEKHLADRFGPVPP
QVKTMLSVVRLQWLGKKLGFEKISFKKNSLRGYFLSDKQSAYFDSNTFTKILTFAQNHPR
MCNLKEVKNTLRIAFDHVKTVEEAIETLELID
NT seq
3339 nt
NT seq
+upstream
nt +downstream
nt
ttgaacattcgagatttaataaaccgatacaaaaccgacgatagggtaacccaatttacc
aaagcgttgaatgcgaccagaaacccaaagatacaattaaagggattggtgggctcagcc
gatgctattgttgccctttcttcttattttttattacacaagcccatcatgttcgttttg
ccggacagggaagaagctgcctatttccagtcggacctggaaagcgtactggataaacag
gttttactgttcccttcttcttaccggaaatctttcgattttacgcaggtagatacagcc
aatgtattggcccgtgcagaggtattgaatgaactgaaccacgattcggaatacggaaaa
attgtagtttcttatcccgaagccattgccgaaaaggtgattgatcgttccgctttagaa
aaaaacacgttggaaatcagccttgaagcaaaattgggtatcgattttatcaatgaattt
ttaattgattacgatttcgaccgaagggattttgtttatgagccggggcagttttctatc
cgtgggggtattgtagatatcttttctttctcctctgatcttccctaccgtatcgaattt
tttggcgatgaggtagaaagcatcagaagtttcgagatcgaaagccagctttcggtggcc
gatcttaaatcgttgacaattgtgcccaatgtacaggccaagtttttaacggaaagtaat
attagcatcctcgattatattgatcaggatacccagctctggtttaaagatgtagagttt
actttagacattgttaaagcaggatataaaaaagctgttgaactctggaaagctttgcca
gtggcagataaaacccaaaacccagagtggattgatcctaaatttgctttcagcgatgaa
aaattattgggcgatcaccttcaggatttccctttggtagaattcggcaaacagtttttt
tataaaacagataatcgtttcgagttcaagaccaaaccccagccatccttcaataaagat
tttaacctgctgatccataacctaaaggagaatgaaaaagcaggaattgtcaattttatt
tttaccgattcaccaaagcagattgaacgcttatatgccattttagaggatattgacaaa
acggccaagtttacgccaatcaatagcatgcttcgcgaaggttttgtagatccgcaaatt
caaacggcattttacaccgatcaccagatctttgatcgttactataaatacaagcttaaa
aaaggttatcagaaaagtcaggccattaccctgaaagatttaagagaactgaaatccggc
gattacgttacgcacatcgatcacgggatcggcaaatacgccgggcttgaaaaagtagag
gtaaatggcaaaacgcaagagatgatccgtttaatttatgcggataacgacctgctttat
gtaaacatcaactcattaaaccgcatcgccaaatatagtggcaaagaaagtggtgtaccc
aagatgaataaactgggtacggatgcctgggataagctaaaaaaaactactaaaaaaaaa
gttaaagatatcgcccgggacttaatcaagctatatgccttgcgcaaaacccaggccgga
acagcattttctccagatagctatttacaaactgaactggaggcttcttttatttatgaa
gatacccccgatcaattaaaagcgactcaggatgtgaaaaaggatatggaatcgccacat
ccaatggaccgtttggtgtgcggtgatgtaggctttggaaaaacagagatcgctgtccgt
gcggcatttaaagcggtagcagagggcaaacaggcggcgatattggtaccaactactatt
ttagccttacagcatttcaaaaccttctcttcacgtttaaaagattttccggttacggtt
gattacattaaccgttttaaaaccagtaaacagattaaagatactttggccgaagctgct
gcaggtaaagttgacattttaatcggtacacaccgtttattgagcaaggatgtgaagttt
aaagatctcggcatcatgattattgatgaagagcagaaatttggcgttaccgcaaaagaa
cggttaaaagcagtacgtgtaaacgtcgataccttaacgctcaccgcaacgccaattcca
agaacattgcatttctctttaatgggggcaagggatttatcgatcatcagcacacctcca
ccaaataggcaaccagtaagtaccgaattacatgtatttaatgataaattgatccaggaa
gccgttcagttcgaattagaccgtggcggacaggttttctttatccataaccgggttaac
gacctgatgcaattgggtgggctgatccagaaactggttccaaaggcaagaattggtatt
gcgcacgggcagttagacggcgaccaactggaagatgttatgcttgatttcattaatggt
gaaaaggatgttttagtagccactaccattatcgaagctggtttagatattccgaacgcc
aataccatcatcatcaaccatgcacacatgtttggcttgagcgatctgcaccagatgcgc
ggcagggttggacgaagcaataaaaaagctttctgttatttactttcgccacctttatct
accctaacctccgaagctcgtaagcgtttaagcgcaatagaagagttttctgatcttggc
agtggttttaatgtggccatgcgcgatttggatattcgtggaagcggaaatttattgggt
gcagagcaaagtggtttcattgccgaaataggttttgaaatgtaccataaaatattggac
gaagccattcaggaattaaaagaagctgaatttaaaggcctgttcgaaaatgaacctgcc
cgtccgtttgtgggctttacacaagtagatacggacctggagttgtacattccagatgct
tacattaccaatattactgagcgctataatttatatactgaactttctaaacttgataat
gaagcagaactcgccatttttgaaaaacatttggccgaccgtttcggaccagttcctcca
caggttaaaaccatgcttagtgtcgtgcgtttgcagtggctgggtaagaaattaggtttt
gagaaaatcagtttcaagaaaaatagtttgcgtggatatttcttaagcgataaacaatcg
gcttatttcgactcgaataccttcaccaaaattttaacctttgcacagaaccatccgcgg
atgtgcaatttaaaagaggtaaaaaatacgttaaggattgcttttgatcatgtaaaaacc
gttgaggaagcaatcgaaactttagaacttatcgactaa
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