Pelagibacterium flavum: OF122_09050
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Entry
OF122_09050 CDS
T08676
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pem
Pelagibacterium flavum
Pathway
pem03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pem00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
OF122_09050 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pem03400
]
OF122_09050 (ligD)
Enzymes [BR:
pem01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
OF122_09050 (ligD)
DNA repair and recombination proteins [BR:
pem03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
OF122_09050 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
DNA_ligase_OB_2
RNA_ligase
DNA_ligase_C
Motif
Other DBs
NCBI-ProteinID:
UYQ73886
LinkDB
All DBs
Position
1810321..1812783
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AA seq
820 aa
AA seq
DB search
MAQARDLLDEYRAKRDFTKTSEPKGGKGAASGNVFVVQKHDATRLHYDFRLEYEGVLKSW
AVTRGPSTDPADKRLAVRTEDHPLDYATFEGIIPKGQYGGGTVMLWDFGTWEPIEDPKKG
FKSGKLKFRLKGERMKGDWALIRMKPKAGEKRENWLLIKEHDDFATDGGSELLDEDTSVS
TGRKMAAIEKGKPPAKKAKADERPLPKFVEPQLATLVDSVPTGNDWLFEMKYDGYRCVAA
VSGENVRLYTRNGLDWTDKFASLVAPMSMLTKSSALLDGEICAFDESGKTSFSTLKSRLS
EGGPLVYFAFDLLEIDGKSLRSKPLSERKAALEDLLGRRTRHDPIQFSPDIAGKGEEVFS
AICEAGHEGIIAKRETAPYRSGRGKSWLKVKCTLRQEFVIVGWSPSEKRRGVFASLLLAT
QEDGKLVYRGRVGTGFSDDLRSNLQAMLEKDARKTAPLSGVPREMARGAHWVSPRHLAEI
AYTELTPDGVLRHPSFLGLREDKLAKDISLEQPAKAKGNKAMSLSEDLGIAAAEKAGIKL
SSPEKVLYPGQGVTKGKLAAYYASVVEAMMPYIADRPLSLVRCPAGRAKQCFFQKHDTGG
FAQGMDTVQITEKDGKSDSYFTLNGLEGLLAGVQMGVLEFHIWGSRRDAVEKPDRIVFDI
DPDEGLDFGDVKSAALDIRDRLADLGLQTFAMVTGGKGIHVIAPVTRRAEWPDVKAFASG
FAKQMAEDEPDRFTATLSKKARKGKMFIDYLRNERGSTAIAPYSTRAKEGAPVAVPVGWD
EVETLASANGFSLEAAVERSQTNPWPSYAKLRQSLPKTSK
NT seq
2463 nt
NT seq
+upstream
nt +downstream
nt
atggcccaggcccgcgacctgctcgacgaataccgcgcaaagcgggatttcacgaaaacc
agcgagcccaagggaggcaagggcgcggcctctggcaacgtctttgtcgtgcaaaagcac
gacgcaacgcggctccattacgattttcggctcgaatatgaaggcgtgctcaagagctgg
gccgtgacgcgcggccccagtaccgatccagccgacaagcggcttgccgtccggaccgaa
gatcatccgctcgactacgccaccttcgagggcataattcccaagggacagtatggcggc
ggcaccgtcatgctctgggattttggcacctgggagcccattgaagatcccaaaaagggg
ttcaagtcgggcaagctcaagtttcgcctcaagggcgagcggatgaaaggcgattgggcc
ttgatacgcatgaagccgaaagccggcgaaaagcgcgagaactggctgctcatcaaggaa
cacgacgacttcgccaccgacggcggctccgaacttctcgacgaggacacgagcgtgtcg
accggccgcaagatggccgccatcgaaaagggcaagccaccggcaaaaaaggcaaaggcg
gatgagcgacctttgccgaaatttgtcgaaccccagcttgcaaccctggtcgatagcgtc
ccgacaggcaatgactggctgtttgagatgaaatatgatggctatcgctgcgtggctgct
gtttcaggcgaaaatgtccggctctacacgcgcaacgggctcgactggaccgacaagttc
gcttccctggtcgcgccgatgtcgatgctgacgaaatcgagcgcgctgctggatggggag
atttgtgcttttgatgaaagcggcaagaccagtttctcgaccctgaagtcgcgcctttcc
gaaggtggacctctcgtctatttcgcgttcgatcttcttgagatcgatggcaagtcattg
cggtccaagccgctttcagagcgcaaggcggcactggaagaccttttgggtcgccgcacg
cgccacgatccgatccagttctcgccagacatcgccggcaagggtgaggaggttttttct
gccatttgcgaggccggtcacgagggtattatcgccaaacgcgaaacggcgccgtaccgc
tccggtcgcggcaaatcctggctcaaggtcaaatgcaccctgcggcaggaattcgtcatc
gttggctggtctccgtccgaaaagcggcgcggcgttttcgcgtcgctgctgctggccacc
caggaagatggaaagctggtctatcgcggccgtgtaggcacgggattttccgatgatttg
cggtccaacctccaagcgatgctggaaaaggatgcccgcaagaccgcacccctgagcggg
gtgccgcgcgaaatggcgcgcggcgctcactgggtttcgccgcgccatctggccgagatc
gcctataccgagctgacgccggatggcgttctgcgccatccttcgttcttgggattgcgg
gaggacaagctggcaaaagacatcagcctggaacaaccggccaaggccaaaggaaacaaa
gccatgtcgctgagtgaggatttggggatcgccgccgcggaaaaggctggcatcaagctc
tcgagcccggaaaaggtgctttatcccgggcaaggggtgaccaagggaaagctcgccgcc
tattatgcctcggtggtcgaggcgatgatgccttacatcgccgatcgtccgttgagcctt
gtgcgctgtcccgctggccgcgccaagcagtgctttttccaaaagcacgacaccggcggg
tttgcgcagggcatggatactgtccagatcactgaaaaggacggcaagtccgacagctat
ttcaccttgaacggtcttgaggggcttctggcgggcgtgcagatgggcgttctggagttc
catatctggggctcgcggcgcgatgccgttgaaaagccggacaggattgtcttcgatatt
gatccggatgagggcctcgatttcggcgacgtcaaatccgccgcgctcgatattcgcgat
cggcttgccgacctgggccttcaaacctttgccatggtaaccggcggcaaaggtatccat
gtgatcgcgccggtcacccgccgcgccgaatggccggacgtcaaggcgttcgcatcgggg
tttgcaaagcagatggccgaggatgaacctgatcgatttacggcaacgctttccaaaaag
gcccgtaaaggcaaaatgttcatcgactatttgaggaatgaacggggatcgacagcgatc
gcgccttactccacccgggccaaagaaggggcgcccgtcgctgtgcccgtgggttgggac
gaggtcgagacgctggcctcggccaacggcttttcccttgaagcggcagtcgagcggtcg
caaaccaatccctggcccagctacgcaaagctgcgtcagtcgctccccaaaaccagcaaa
tag
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