KEGG   Pelagibacterium flavum: OF122_09050
Entry
OF122_09050       CDS       T08676                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
pem  Pelagibacterium flavum
Pathway
pem03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:pem00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    OF122_09050 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pem03400]
    OF122_09050 (ligD)
Enzymes [BR:pem01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     OF122_09050 (ligD)
DNA repair and recombination proteins [BR:pem03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     OF122_09050 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S DNA_ligase_OB_2 RNA_ligase DNA_ligase_C
Other DBs
NCBI-ProteinID: UYQ73886
LinkDB
Position
1810321..1812783
AA seq 820 aa
MAQARDLLDEYRAKRDFTKTSEPKGGKGAASGNVFVVQKHDATRLHYDFRLEYEGVLKSW
AVTRGPSTDPADKRLAVRTEDHPLDYATFEGIIPKGQYGGGTVMLWDFGTWEPIEDPKKG
FKSGKLKFRLKGERMKGDWALIRMKPKAGEKRENWLLIKEHDDFATDGGSELLDEDTSVS
TGRKMAAIEKGKPPAKKAKADERPLPKFVEPQLATLVDSVPTGNDWLFEMKYDGYRCVAA
VSGENVRLYTRNGLDWTDKFASLVAPMSMLTKSSALLDGEICAFDESGKTSFSTLKSRLS
EGGPLVYFAFDLLEIDGKSLRSKPLSERKAALEDLLGRRTRHDPIQFSPDIAGKGEEVFS
AICEAGHEGIIAKRETAPYRSGRGKSWLKVKCTLRQEFVIVGWSPSEKRRGVFASLLLAT
QEDGKLVYRGRVGTGFSDDLRSNLQAMLEKDARKTAPLSGVPREMARGAHWVSPRHLAEI
AYTELTPDGVLRHPSFLGLREDKLAKDISLEQPAKAKGNKAMSLSEDLGIAAAEKAGIKL
SSPEKVLYPGQGVTKGKLAAYYASVVEAMMPYIADRPLSLVRCPAGRAKQCFFQKHDTGG
FAQGMDTVQITEKDGKSDSYFTLNGLEGLLAGVQMGVLEFHIWGSRRDAVEKPDRIVFDI
DPDEGLDFGDVKSAALDIRDRLADLGLQTFAMVTGGKGIHVIAPVTRRAEWPDVKAFASG
FAKQMAEDEPDRFTATLSKKARKGKMFIDYLRNERGSTAIAPYSTRAKEGAPVAVPVGWD
EVETLASANGFSLEAAVERSQTNPWPSYAKLRQSLPKTSK
NT seq 2463 nt   +upstreamnt  +downstreamnt
atggcccaggcccgcgacctgctcgacgaataccgcgcaaagcgggatttcacgaaaacc
agcgagcccaagggaggcaagggcgcggcctctggcaacgtctttgtcgtgcaaaagcac
gacgcaacgcggctccattacgattttcggctcgaatatgaaggcgtgctcaagagctgg
gccgtgacgcgcggccccagtaccgatccagccgacaagcggcttgccgtccggaccgaa
gatcatccgctcgactacgccaccttcgagggcataattcccaagggacagtatggcggc
ggcaccgtcatgctctgggattttggcacctgggagcccattgaagatcccaaaaagggg
ttcaagtcgggcaagctcaagtttcgcctcaagggcgagcggatgaaaggcgattgggcc
ttgatacgcatgaagccgaaagccggcgaaaagcgcgagaactggctgctcatcaaggaa
cacgacgacttcgccaccgacggcggctccgaacttctcgacgaggacacgagcgtgtcg
accggccgcaagatggccgccatcgaaaagggcaagccaccggcaaaaaaggcaaaggcg
gatgagcgacctttgccgaaatttgtcgaaccccagcttgcaaccctggtcgatagcgtc
ccgacaggcaatgactggctgtttgagatgaaatatgatggctatcgctgcgtggctgct
gtttcaggcgaaaatgtccggctctacacgcgcaacgggctcgactggaccgacaagttc
gcttccctggtcgcgccgatgtcgatgctgacgaaatcgagcgcgctgctggatggggag
atttgtgcttttgatgaaagcggcaagaccagtttctcgaccctgaagtcgcgcctttcc
gaaggtggacctctcgtctatttcgcgttcgatcttcttgagatcgatggcaagtcattg
cggtccaagccgctttcagagcgcaaggcggcactggaagaccttttgggtcgccgcacg
cgccacgatccgatccagttctcgccagacatcgccggcaagggtgaggaggttttttct
gccatttgcgaggccggtcacgagggtattatcgccaaacgcgaaacggcgccgtaccgc
tccggtcgcggcaaatcctggctcaaggtcaaatgcaccctgcggcaggaattcgtcatc
gttggctggtctccgtccgaaaagcggcgcggcgttttcgcgtcgctgctgctggccacc
caggaagatggaaagctggtctatcgcggccgtgtaggcacgggattttccgatgatttg
cggtccaacctccaagcgatgctggaaaaggatgcccgcaagaccgcacccctgagcggg
gtgccgcgcgaaatggcgcgcggcgctcactgggtttcgccgcgccatctggccgagatc
gcctataccgagctgacgccggatggcgttctgcgccatccttcgttcttgggattgcgg
gaggacaagctggcaaaagacatcagcctggaacaaccggccaaggccaaaggaaacaaa
gccatgtcgctgagtgaggatttggggatcgccgccgcggaaaaggctggcatcaagctc
tcgagcccggaaaaggtgctttatcccgggcaaggggtgaccaagggaaagctcgccgcc
tattatgcctcggtggtcgaggcgatgatgccttacatcgccgatcgtccgttgagcctt
gtgcgctgtcccgctggccgcgccaagcagtgctttttccaaaagcacgacaccggcggg
tttgcgcagggcatggatactgtccagatcactgaaaaggacggcaagtccgacagctat
ttcaccttgaacggtcttgaggggcttctggcgggcgtgcagatgggcgttctggagttc
catatctggggctcgcggcgcgatgccgttgaaaagccggacaggattgtcttcgatatt
gatccggatgagggcctcgatttcggcgacgtcaaatccgccgcgctcgatattcgcgat
cggcttgccgacctgggccttcaaacctttgccatggtaaccggcggcaaaggtatccat
gtgatcgcgccggtcacccgccgcgccgaatggccggacgtcaaggcgttcgcatcgggg
tttgcaaagcagatggccgaggatgaacctgatcgatttacggcaacgctttccaaaaag
gcccgtaaaggcaaaatgttcatcgactatttgaggaatgaacggggatcgacagcgatc
gcgccttactccacccgggccaaagaaggggcgcccgtcgctgtgcccgtgggttgggac
gaggtcgagacgctggcctcggccaacggcttttcccttgaagcggcagtcgagcggtcg
caaaccaatccctggcccagctacgcaaagctgcgtcagtcgctccccaaaaccagcaaa
tag

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