Pelagibacterium flavum: OF122_10720
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Entry
OF122_10720 CDS
T08676
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pem
Pelagibacterium flavum
Pathway
pem03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pem00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
OF122_10720 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pem03400
]
OF122_10720 (mfd)
Enzymes [BR:
pem01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
OF122_10720 (mfd)
DNA repair and recombination proteins [BR:
pem03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
OF122_10720 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
CarD_TRCF_RID
Helicase_C
UvrB_inter
MFD_D3
RecG_dom3_C
AAA_16
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
UYQ70554
LinkDB
All DBs
Position
complement(2142177..2145659)
Genome browser
AA seq
1160 aa
AA seq
DB search
MDDLLRDRPSRILANLPDGMQPAVLAREIEQRLKDAPQAPVALVFVARDGRRLQRMADIL
QTMLPGHPVLIFPAWDCLPYDRVSPNAVTIAARMSALAQLVDPAIKGAIVLTAVNALIQR
VVPRDVVAAMTFSAAAGRMVDSEKLIGWATNNGYLRVPTVRQAGEYAVRGGLVDLYPAGH
DAPLRFDFFGQQLETIRAFDPESQRTTGNVKSVTLVPMSEAMLTEDTIRRFRRNYTTAFG
GNTADDPLYGAISAGQRFAGMEHWLPFFYEEMETLPAYIGDAPVYFDDQSREAYAERRDQ
IVDYYNARKEAREQGSTAGAPYKPLKPELLYNVEQGPYELARGHEISELSPFLPADENLP
VIDCAGHLAPSFAAERQAADTNLFEAVISRIKSEARAGRKTIITCWTEGTRDRMGQVLKD
HGLKAVKKLENWKQVDLLKVGQLGLVILPLETGYLTDNIAVLSEQDILGERIIRQTRRKK
ASDALTEASALSAGDLVVHVDHGIGRFIGLKAIEVQGAPHDCVEIEYAKGDKLYLPVENI
ELLSRYGAEGAELDKLGGVAWQAKKSKLKKRIRDMAEQLIKIAAARQTAHAEPIEVQTGA
YDEFCARFPYEETEDQLATIDAVFEDLTSGRIMDRLVCGDVGFGKTEVALRAAFVMAMSG
RQVAIVVPTTLLSRQHFKTFSDRFAGLPVRVRQASRLVPAAELKATKEGLKDGSVDIVVG
THALLSKSIEFRDIGLMIVDEEQHFGVAHKERLKEMRANVHVLTLSATPIPRTLQLALTG
VRDLSLLATPPVDRLAIRTFVSPFDALVVREALLREKYRGGQAFYVCPRISDQADIAQFL
ADHVPEVSFVVANGQMAPQQLDDTMNAFYDGKFDVLVATTIVESGLDVPTANTLIVHRAD
KFGLAQLYQIRGRIGRSKTRAYAIFTVPADRKLNDQAQRRLQVLQSLESLGAGFQLASHD
LDIRGAGNLLGEEQSGHIREVGFELYQSMLEEAVASLRAGQSAEEEEAGQWSPQISLGMP
VMIPEAYVPDLQVRMQLYRRLGDLTDANEIDGVGAEMIDRFGPLPEEVEALLKVVLIKSL
CRAANVEKVDAGPKGALITLRNGVFPNPAGLVRHIADPGQAARLRPDQKIMFARNWPTAE
QRLKGSAAILSRLAGLAAGQ
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atggacgatttgctgcgcgacagaccctcaaggattctggccaaccttcccgacggcatg
cagccggcggtgttggcgcgcgaaatcgagcaacgcctcaaggatgcaccgcaagcccct
gttgcgcttgtctttgtcgctcgtgatggtcgtcgcttgcagcgcatggccgatatcctg
caaaccatgttgcccggccatcccgtgctgatctttccggcctgggactgtctgccctat
gatcgcgtttcgccaaacgccgtaaccatcgccgcccgtatgtcggcactggcgcaactg
gtcgatcccgcgatcaaaggcgccatcgttctcaccgccgtaaacgcgctcatccagcgc
gtcgtgccgcgcgatgtggtcgctgccatgaccttctcggccgcggcgggacgcatggtc
gacagtgaaaagctcatcggctgggccaccaacaacggctatctgcgcgtgcccaccgtg
cgccaagccggagaatacgccgtgcggggcgggctggtcgatctctatccggccggtcat
gacgcaccgttgcgctttgactttttcggccaacagcttgaaaccattcgcgctttcgat
cccgaaagccagcggaccaccggcaatgtcaaatcggtgaccctcgttcccatgagcgag
gccatgctcaccgaagataccatccgccggttccgccgcaactacacaacagccttcggt
ggcaacacagccgacgacccgctctatggcgccatcagcgctggccagcgctttgcgggc
atggagcactggttgcccttcttttacgaagagatggaaacgctgcccgcttacatcggc
gacgctcctgtctatttcgacgatcagtcgcgcgaggcctatgccgaacgccgcgaccag
atcgtcgactactacaacgcccgcaaggaagctcgcgagcagggcagcaccgccggcgct
ccctataagccgctcaaacccgaactgctctacaatgtggagcaggggccatacgagttg
gcgcgcggtcacgagatttccgaactctcgcctttcctgcccgccgacgaaaacctgccg
gtcatcgactgcgccgggcatctggcacccagctttgccgcggaacgtcaggcagcagat
accaacctgtttgaagcggtcatttcgcgcatcaagtccgaggcgcgggcagggcgcaag
acgatcatcacctgctggaccgaaggcacccgcgaccgcatgggccaggtgctcaaggat
cacgggctcaaggcggtcaaaaagctcgagaactggaaacaggtcgatctgctcaaggtc
ggccaactcggcctggtcattctgcctctagaaaccggctatctgaccgacaatatcgcc
gtcctgtccgaacaggatattctgggcgagcgcatcatccgtcagacacggcgcaaaaag
gcatccgacgcgctcaccgaagcgagtgcgctgtcggcgggcgatctcgtcgtccacgtc
gatcacggcatcggacgcttcatcggcctcaaggccattgaggtgcaaggcgcgccccac
gactgcgtcgagatcgaatacgccaagggcgacaagctctatctgcccgtcgaaaatatc
gagctgctctcgcgatatggggcagagggcgccgaactcgacaagctgggcggggtggca
tggcaggccaagaagtccaaactcaaaaagcgcatacgcgacatggccgagcagctcatc
aagattgctgccgcccgccagacggcccacgccgagcccatcgaagtccagaccggcgcc
tatgatgaattctgcgcgcgttttccctacgaagaaaccgaggaccaactcgccactatc
gacgcagtgttcgaagatcttacctcgggccgcatcatggaccggctggtctgcggcgat
gtgggcttcggcaagaccgaagtggcgctccgtgccgccttcgtcatggccatgagcggg
cgccaggtcgccatcgtcgtgcccacgaccctgctgtcccgccagcacttcaagacgttc
tcggaccgtttcgccggcctgcctgtgcgcgtgcgtcaggcctcgcggctcgtcccggcc
gccgaactcaaggcaacaaaagagggcctcaaggacggcagcgtcgatatcgtggtcggc
acccacgccctgttgtcgaaatcgatcgaattccgcgacattggcctgatgattgtcgat
gaggagcagcattttggcgtggcgcacaaggagcgcctcaaggaaatgcgggccaacgtt
cacgtgttaacgctctcggcaacgccaatcccgcgcaccttgcaactggccctgaccggc
gtgcgcgatctttccctgcttgccacccctccagtggatcgcctcgccatccgcactttt
gtctcgcccttcgatgcgctcgtcgtccgcgaagccctgctgcgcgagaaatatcgtggc
ggccaggccttctatgtctgcccgcgtatttccgatcaggccgacatcgcgcaattcctg
gccgaccacgtgcccgaagtcagcttcgtggtcgccaacggccagatggcgccccagcag
ctcgatgacaccatgaacgccttttacgatggcaagttcgatgtgctcgtcgcaaccacc
atcgtggaatccggcctcgacgtgccgaccgccaacaccctgatcgtgcaccgcgccgac
aagttcggccttgcccagctctatcagatccgtggccgcatcggccgctccaagacccgc
gcctacgccattttcacagtccctgcagaccgcaaactcaacgatcaggcccagcgccgt
ctgcaggttctccagtcgctcgaatcgcttggcgccggctttcagctcgccagccacgac
ctcgacattcgcggcgccggcaatctcctgggcgaagaacagtccggccacatccgggaa
gtggggtttgagctctaccagtccatgctcgaagaggcagtggcatccttgagggcaggg
caatcggccgaggaagaagaggccggccaatggtcgccgcagatttcgctgggcatgccg
gtgatgattcccgaagcctatgtgccggaccttcaggtccgcatgcagctttaccgccgc
cttggcgatctgaccgatgccaacgaaatcgatggcgtcggcgcggaaatgatcgaccgg
ttcggtccgctgcccgaggaagtcgaagccctgctcaaggtcgtgctcatcaaatctctg
tgtcgtgccgccaatgttgagaaggtcgatgccggccccaagggcgcactaatcaccctg
cgcaacggcgtcttcccaaatcctgccggattggtgcgtcatatcgcagaccccggacag
gcggcccggctgcgccccgatcaaaagatcatgttcgcgcgcaactggccgactgccgag
cagcgcctcaagggcagcgccgcgatcctctcgcggctggccggtctcgcagctggccag
tga
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